Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EXQ	28659	2024-12-28	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.68	0.0	0.04	12.72	0.00	2.446	13.67	0.00	4.7	95.3	0.0	-0.46	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✔	8EXR	28660	2024-12-27	2022-10-25	3.8	4.08	3.96	4.1	0.026	1.94	0.0	0.11	12.16	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.72	0.0	0.04	16.61	0.00	2.088	12.13	3.37	3.4	96.6	0.0	0.69	0.98	0.53	0.67	0.84	5111	590	5	0	7	0	0	logfile
✔	8EXS	28661	2024-12-28	2022-10-25	4.3	3.73	4.19	3.8	0.020	1.72	0.0	0.10	10.18	0.01	1.722	4.78	0.58	3.4	96.6	0.0	0.10	0.55	0.48	—	3.7	0.003	0.72	0.0	0.04	13.00	0.00	2.074	13.32	0.00	4.5	95.5	0.0	0.35	2.11	0.63	0.65	—	9320	1112	4	0	2	0	0	logfile
✔	8H9K	34570	2024-12-27	2022-10-25	3.51	3.83	3.65	3.7	0.006	0.91	0.0	0.05	15.47	0.01	2.169	13.42	0.00	5.8	94.2	0.0	-2.34	0.39	0.77	1.95	3.8	0.004	0.77	0.0	0.04	17.18	0.00	2.396	9.10	2.54	3.4	96.6	0.0	2.82	1.20	0.39	0.77	1.87	3381	421	3	0	0	0	0	logfile
✔	8EXA	28656	2024-12-27	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.58	0.00	2.495	12.36	2.83	3.3	96.7	0.0	0.89	1.14	0.60	0.68	3.79	5539	341	4	139	0	0	0	logfile
✔	8H9R	34578	2024-12-27	2022-10-25	3.97	4.28	4.04	4.0	0.006	0.79	0.0	0.05	15.25	0.00	2.244	16.26	0.00	6.1	93.9	0.0	-1.99	0.38	0.80	0.71	4.0	0.003	0.74	0.0	0.04	17.98	0.00	2.489	9.55	1.69	3.9	96.1	0.0	2.23	1.07	0.38	0.79	0.51	3381	421	3	0	0	0	0	logfile
✔	8H9Q	34577	2024-12-30	2022-10-25	3.47	3.93	3.89	3.9	0.005	0.73	0.0	0.05	13.53	0.01	2.203	12.33	0.00	3.2	96.8	0.0	-3.02	0.62	0.80	2.13	3.9	0.006	0.97	1.0	0.04	16.62	0.01	1.794	15.30	3.59	1.5	98.5	0.0	1.72	1.34	0.64	0.82	1.50	12083	1596	19	0	0	0	0	logfile
✔	8H9J	34569	2024-12-30	2022-10-25	3.26	3.64	3.36	3.6	0.010	0.85	0.0	0.05	13.20	0.01	2.233	13.39	0.00	3.8	96.2	0.0	-3.26	0.64	0.81	2.37	3.6	0.003	0.66	0.0	0.04	16.27	0.00	2.511	9.56	2.47	1.7	98.3	0.0	2.01	1.00	0.59	0.80	1.80	12082	1596	19	0	0	0	0	logfile
✔	8EXT	28662	2024-12-28	2022-10-25	4.6	4.06	4.52	7.3	0.026	2.04	0.0	0.12	10.97	0.01	2.014	14.28	2.03	5.3	93.9	0.8	-0.66	0.53	0.45	—	7.3	0.003	0.70	0.0	0.04	12.81	0.00	2.200	13.78	0.00	8.0	92.0	0.0	-0.82	1.13	0.61	0.63	—	8846	1062	4	0	2	0	0	logfile
✔	8H9M	34573	2024-12-30	2022-10-25	3.0	3.41	3.18	3.4	0.004	0.60	0.0	0.04	13.76	0.01	2.218	9.32	0.00	4.0	96.0	0.0	-2.47	0.64	0.83	2.41	3.4	0.004	0.65	0.0	0.04	16.35	0.00	2.479	8.42	2.23	1.7	98.3	0.0	2.04	0.57	0.62	0.85	1.98	12083	1596	19	0	0	0	0	logfile
✔	8H9N	34574	2024-12-27	2022-10-25	3.56	3.82	3.61	3.7	0.007	0.88	0.0	0.05	15.25	0.01	2.178	14.62	0.00	5.6	94.4	0.0	-2.28	0.36	0.77	1.69	3.7	0.003	0.72	0.0	0.04	18.06	0.01	2.528	9.99	3.10	2.9	97.1	0.0	2.43	1.11	0.36	0.77	1.69	3381	421	3	0	0	0	0	logfile
✔	8EX9	28655	2024-12-27	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.006	0.68	0.0	0.04	24.01	0.00	2.471	12.07	4.76	6.8	93.2	0.0	-1.31	0.25	0.63	0.73	4.32	4199	166	4	139	0	0	0	logfile
✔	8H9F	34565	2024-12-30	2022-10-25	2.69	3.04	2.84	3.0	0.005	0.69	0.0	0.04	14.64	0.01	2.198	7.68	0.16	2.4	97.6	0.0	-2.36	0.66	0.86	3.41	3.1	0.003	0.58	0.0	0.04	16.51	0.00	2.530	7.20	1.59	1.7	98.3	0.0	2.22	1.12	0.55	0.83	2.85	12265	1596	22	0	3	0	0	logfile
✔	8H9G	34566	2024-12-27	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.64	0.0	0.04	17.78	0.00	2.572	5.97	4.23	4.1	95.9	0.0	2.18	0.90	0.33	0.81	1.93	3381	421	3	0	0	0	0	logfile
✔	8H95	34555	2024-12-29	2022-10-24	3.38	4.02	3.53	4.0	0.004	0.81	1.0	0.05	17.99	0.01	2.171	9.12	0.32	5.9	94.1	0.0	-0.70	0.70	0.74	1.18	4.0	0.003	0.68	0.0	0.04	18.55	0.00	2.356	6.96	3.20	5.2	94.8	0.0	-0.84	1.19	0.66	0.71	1.03	11098	1405	3	0	0	0	0	logfile
✔	8BFB	16019	2024-12-27	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.004	0.51	0.0	0.05	17.21	0.00	2.631	5.39	1.43	1.4	98.6	0.0	-2.94	1.02	0.51	0.86	6.54	2860	380	10	0	0	0	0	logfile
✔	8EX5	28651	2024-12-27	2022-10-24	3.47	3.76	3.31	3.7	0.004	0.71	0.0	0.04	12.11	0.00	2.141	9.78	0.00	2.2	97.8	0.0	0.88	0.48	0.70	2.43	3.7	0.003	0.58	0.0	0.04	14.43	0.00	2.582	5.90	1.19	2.5	97.5	0.0	2.31	0.30	0.48	0.71	1.91	3177	414	1	0	0	0	0	logfile
✔	8EX8	28654	2024-12-27	2022-10-24	4.17	4.37	4.02	4.3	0.007	0.96	0.0	0.05	14.00	0.01	2.138	20.49	0.00	5.1	94.9	0.0	-0.72	0.56	0.74	—	4.4	0.003	0.64	0.0	0.04	13.96	0.00	2.553	11.49	0.00	2.0	98.0	0.0	1.01	0.58	0.53	0.71	—	3177	414	1	0	0	0	0	logfile
✔	8EX7	28653	2024-12-27	2022-10-24	3.53	3.77	3.48	3.8	0.004	0.69	0.0	0.04	13.31	0.01	2.211	6.36	0.00	4.2	95.8	0.0	0.68	0.59	0.76	2.20	3.8	0.003	0.59	0.0	0.04	15.33	0.00	2.583	6.83	3.28	2.5	97.5	0.0	2.10	0.31	0.59	0.75	1.18	3177	414	1	0	0	0	0	logfile
✔	8H8X	34551	2024-12-30	2022-10-24	3.92	4.03	3.85	3.9	0.011	0.89	0.0	0.05	9.89	0.01	2.101	4.03	0.00	8.2	91.8	0.0	-3.57	0.79	0.76	2.31	3.9	0.003	0.59	0.0	0.04	13.07	0.00	2.273	4.85	0.53	5.9	94.1	0.0	-0.27	1.96	0.79	0.77	1.76	13418	850	1	0	0	0	6667	logfile

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