Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H8X	34551	2024-12-30	2022-10-24	3.92	4.03	3.85	3.9	0.011	0.89	0.0	0.05	9.89	0.01	2.101	4.03	0.00	8.2	91.8	0.0	-3.57	0.79	0.76	2.31	3.9	0.003	0.59	0.0	0.04	13.07	0.00	2.273	4.85	0.53	5.9	94.1	0.0	-0.27	1.96	0.79	0.77	1.76	13418	850	1	0	0	0	6667	logfile
✔	8BF8	16016	2024-12-27	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	21.43	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	3.1	0.003	0.54	0.0	0.03	21.57	0.00	2.536	7.87	1.86	3.1	96.9	0.0	0.70	0.88	0.59	0.75	2.93	4686	302	2	111	0	0	0	logfile
✔	8EX5	28651	2024-12-27	2022-10-24	3.47	3.76	3.31	3.7	0.004	0.71	0.0	0.04	12.11	0.00	2.141	9.78	0.00	2.2	97.8	0.0	0.88	0.48	0.70	2.43	3.7	0.003	0.58	0.0	0.04	14.43	0.00	2.582	5.90	1.19	2.5	97.5	0.0	2.31	0.30	0.48	0.71	1.91	3177	414	1	0	0	0	0	logfile
✔	8BFA	16018	2024-12-27	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.3	0.003	0.48	0.0	0.05	17.15	0.00	2.606	4.85	0.71	2.2	97.8	0.0	-2.39	1.32	0.51	0.88	6.16	2860	380	10	0	0	0	0	logfile
✔	8EWi	28646	2024-12-29	2022-10-23	3.5	2.81	3.63	2.1	0.003	0.53	0.0	0.04	12.21	0.00	2.153	14.61	5.25	5.7	94.2	0.1	-0.22	0.68	0.66	0.83	1.9	0.003	0.71	0.0	0.04	14.59	0.00	2.470	13.34	3.32	5.5	94.4	0.1	-0.13	0.49	0.68	0.65	0.60	55708	7100	8	0	12	0	0	logfile
✔	8H8E	34544	2024-12-31	2022-10-22	3.81	4.25	3.95	4.1	0.003	0.65	0.0	0.04	17.90	0.00	2.210	15.16	0.06	9.2	90.8	0.0	-2.48	0.64	0.68	2.02	4.1	0.003	0.66	0.0	0.04	19.13	0.00	2.485	11.13	2.27	7.5	92.5	0.0	-1.88	0.49	0.68	0.77	1.61	15818	1723	7	75	0	0	0	logfile
✔	8H8D	34543	2024-12-28	2022-10-22	4.26	4.56	4.17	4.3	0.004	0.87	0.0	0.05	18.37	0.02	2.155	18.68	4.97	4.6	95.4	0.0	-0.02	0.62	0.79	—	4.3	0.003	0.69	0.0	0.04	14.64	0.00	2.561	11.58	0.00	5.6	94.4	0.0	-0.08	1.33	0.64	0.81	—	7054	856	3	0	0	0	0	logfile
✔	8H8A	34540	2024-12-28	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.007	0.84	0.0	0.05	15.80	0.01	2.349	5.78	2.22	14.9	85.0	0.1	-2.72	1.16	0.77	0.90	4.33	8454	1039	2	0	0	0	0	logfile
✔	8H8C	34542	2024-12-31	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.004	0.71	0.0	0.05	16.31	0.00	2.331	6.84	4.26	15.1	84.9	0.0	-3.44	0.69	0.72	0.82	2.96	16940	2078	4	0	0	0	0	logfile
✔	8EWF	28644	2024-12-29	2022-10-22	3.92	4.61	4.05	4.4	0.004	0.68	0.0	0.04	16.92	0.00	1.761	21.32	0.88	6.6	93.4	0.0	-1.26	0.51	0.66	0.79	4.3	0.004	0.69	0.0	0.04	16.75	0.00	2.218	14.52	4.01	8.2	91.8	0.0	-1.36	1.48	0.54	0.80	0.78	56534	3697	17	0	9	0	27869	logfile
✔	8H8B	34541	2024-12-28	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.004	0.71	0.0	0.05	15.58	0.00	2.498	5.74	2.36	11.4	88.6	0.0	-1.82	0.62	0.74	0.85	3.71	8344	1027	1	0	0	0	0	logfile
✔	8H8F	34545	2024-12-27	2022-10-22	3.48	4.08	3.87	4.0	0.003	0.69	0.0	0.05	17.03	0.01	2.140	13.54	1.02	3.3	96.7	0.0	-0.20	0.47	0.67	0.99	4.0	0.003	0.61	0.0	0.04	17.78	0.00	2.525	9.60	3.49	3.5	96.5	0.0	0.11	0.44	0.46	0.68	1.11	6168	753	3	0	0	0	0	logfile
✔	8BER	16009	2024-12-27	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.002	0.61	0.0	0.04	14.62	0.00	2.514	8.21	0.82	4.2	95.8	0.0	2.94	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	8EW3	28641	2024-12-30	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.10	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.59	0.0	0.04	13.49	0.00	1.058	4.66	0.64	2.5	97.5	0.0	1.53	1.18	0.75	0.89	3.30	11902	1540	9	0	5	0	0	logfile
✔	8BEi	16004	2024-12-31	2022-10-21	3.06	3.11	3.01	3.2	0.003	0.55	0.0	0.04	16.06	0.01	2.240	5.95	1.38	2.9	97.1	0.0	1.04	0.70	0.83	2.57	3.2	0.003	0.56	0.0	0.04	16.37	0.00	2.608	4.65	2.99	2.9	97.1	0.0	1.21	0.38	0.65	0.83	2.15	16578	2100	6	0	0	0	0	logfile
✔	8EW0	28639	2024-12-30	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.003	0.50	0.0	0.04	18.43	0.00	2.476	5.28	3.93	1.5	98.4	0.1	2.66	0.87	0.69	0.91	3.65	13636	1747	6	0	0	0	0	logfile
✔	8EW2	28640	2024-12-29	2022-10-21	3.1	3.17	3.24	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.54	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.004	0.59	0.0	0.04	17.53	0.00	2.562	9.79	4.01	3.3	96.7	0.0	0.88	0.34	0.78	0.88	2.21	10340	1356	4	0	0	0	0	logfile
✔	8EVH	28629	2024-12-31	2022-10-20	2.85	3.12	2.96	3.0	0.005	0.72	3.0	0.05	26.46	0.00	1.975	8.93	0.09	3.3	96.7	0.0	1.34	0.78	0.83	2.63	3.0	0.004	0.79	1.0	0.04	26.40	0.00	2.302	7.89	1.81	3.0	97.0	0.0	1.67	1.61	0.78	0.86	2.98	16077	1301	13	282	0	0	0	logfile
✔	8EVG	28628	2024-12-31	2022-10-20	2.75	3.37	2.90	3.1	0.020	2.03	0.0	0.13	28.95	0.01	1.794	13.48	0.29	2.8	97.2	0.0	1.12	0.84	0.83	2.42	3.1	0.003	0.63	0.0	0.04	27.43	0.00	2.079	8.03	1.55	2.7	97.3	0.0	1.60	1.27	0.82	0.85	2.66	15577	1212	12	294	0	0	0	logfile
✔	8EVi	28630	2024-12-31	2022-10-20	2.64	3.19	2.79	3.1	0.005	0.68	3.0	0.05	26.59	0.00	2.045	8.89	0.09	3.2	96.8	0.0	1.34	0.71	0.79	3.10	3.1	0.004	0.60	0.0	0.04	26.43	0.00	2.396	6.65	2.53	2.7	97.3	0.0	1.52	0.39	0.64	0.74	3.20	16157	1301	13	286	0	0	0	logfile

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