Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EVG	28628	2024-12-31	2022-10-20	2.75	3.37	2.90	3.1	0.020	2.03	0.0	0.13	28.95	0.01	1.794	13.48	0.29	2.8	97.2	0.0	1.12	0.84	0.83	2.42	3.1	0.003	0.63	0.0	0.04	27.43	0.00	2.079	8.03	1.55	2.7	97.3	0.0	1.60	1.27	0.82	0.85	2.66	15577	1212	12	294	0	0	0	logfile
✔	8EVH	28629	2024-12-31	2022-10-20	2.85	3.12	2.96	3.0	0.005	0.72	3.0	0.05	26.46	0.00	1.975	8.93	0.09	3.3	96.7	0.0	1.34	0.78	0.83	2.63	3.0	0.004	0.79	1.0	0.04	26.40	0.00	2.302	7.89	1.81	3.0	97.0	0.0	1.67	1.61	0.78	0.86	2.98	16077	1301	13	282	0	0	0	logfile
✔	8EVi	28630	2024-12-31	2022-10-20	2.64	3.19	2.79	3.1	0.005	0.68	3.0	0.05	26.59	0.00	2.045	8.89	0.09	3.2	96.8	0.0	1.34	0.71	0.79	3.10	3.1	0.004	0.60	0.0	0.04	26.43	0.00	2.396	6.65	2.53	2.7	97.3	0.0	1.52	0.39	0.64	0.74	3.20	16157	1301	13	286	0	0	0	logfile
✔	8H77	34519	2024-12-31	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.57	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.003	0.64	0.0	0.04	17.50	0.00	0.929	7.71	1.79	4.0	96.0	0.0	-0.44	0.66	0.69	0.76	2.10	15726	1930	8	0	4	0	0	logfile
✔	8EU2	28602	2024-12-28	2022-10-18	2.93	2.77	3.14	2.1	0.005	0.82	0.0	0.05	28.13	0.01	2.381	2.44	0.00	2.5	97.5	0.0	-0.81	0.82	0.81	2.88	2.7	0.004	0.66	0.0	0.04	28.52	0.01	2.498	9.51	5.26	1.6	98.4	0.0	2.61	0.45	0.84	0.85	2.12	8682	524	8	220	0	0	0	logfile
✔	8EUJ	28614	2024-12-29	2022-10-18	3.36	4.07	3.84	3.7	0.006	1.22	0.0	0.06	30.77	0.01	2.233	5.43	0.00	2.6	97.4	0.0	-2.60	0.71	0.76	0.82	3.7	0.004	0.82	0.0	0.04	29.89	0.01	2.322	17.37	5.05	3.4	96.6	0.0	0.36	1.32	0.71	0.78	0.56	11913	747	10	294	0	0	0	logfile
✔	8EU8	28608	2024-12-30	2022-10-18	3.73	2.48	3.71	2.2	0.014	1.81	0.0	0.10	12.70	0.01	1.755	3.29	0.47	5.4	94.6	0.0	-0.91	0.73	0.74	3.31	2.2	0.003	0.71	0.0	0.05	15.30	0.00	2.441	6.19	2.73	3.1	96.9	0.0	-0.01	0.64	0.75	0.75	1.93	14181	1692	24	0	63	0	0	logfile
✔	8EUE	28612	2024-12-30	2022-10-18	3.48	4.06	3.85	3.7	0.007	1.33	0.0	0.06	31.23	0.01	2.242	6.41	0.00	3.8	96.2	0.0	-2.48	0.78	0.80	0.90	3.7	0.004	0.97	0.0	0.04	30.25	0.01	2.311	18.25	5.07	4.1	95.9	0.0	0.78	0.44	0.78	0.80	0.72	11926	751	10	294	0	0	0	logfile
✔	8ETV	28600	2024-12-28	2022-10-17	3.16	3.01	3.36	2.0	0.006	0.87	0.0	0.05	28.21	0.01	2.305	2.83	0.00	2.3	97.7	0.0	-0.99	0.80	0.77	1.76	2.0	0.005	0.64	0.0	0.04	28.69	0.00	2.393	11.88	3.89	2.0	98.0	0.0	2.10	0.44	0.81	0.80	1.23	8682	524	8	220	0	0	0	logfile
✔	8BCZ	15971	2024-12-28	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.52	0.0	0.04	13.46	0.00	2.400	5.38	3.22	2.5	97.5	0.0	0.73	0.43	0.62	0.83	3.82	8505	1100	9	0	0	0	0	logfile
✔	8ET3	28585	2024-12-29	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.77	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.005	0.68	0.0	0.04	14.28	0.00	2.172	4.25	0.73	3.5	96.5	0.0	1.22	0.68	0.86	0.81	2.29	56854	3639	22	0	6	0	28542	logfile
✔	8ET6	28586	2024-12-28	2022-10-16	3.57	3.92	3.77	3.9	0.003	0.53	0.0	0.04	11.90	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.003	0.56	0.0	0.03	14.99	0.00	2.374	5.88	2.36	4.3	95.7	0.0	1.25	1.34	0.51	0.71	1.63	8092	532	2	0	2	0	4007	logfile
✔	8ET7	28587	2024-12-28	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.54	0.0	0.03	15.63	0.00	2.406	6.34	2.83	4.0	96.0	0.0	2.28	1.49	0.48	0.71	1.46	8111	532	3	0	3	0	4007	logfile
✔	8ET9	28589	2024-12-28	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.004	0.60	0.0	0.04	14.77	0.00	2.369	7.94	3.14	3.7	96.3	0.0	1.02	4.55	0.48	0.69	1.85	7685	517	2	0	1	0	3796	logfile
✔	8ET2	28584	2024-12-26	2022-10-15	4.96	5.56	5.14	5.6	0.004	1.00	0.0	0.05	13.70	0.01	1.879	23.18	0.00	11.7	88.3	0.0	-4.06	0.69	0.49	—	5.5	0.003	0.75	0.0	0.05	13.75	0.00	2.464	15.74	0.00	9.2	90.8	0.0	-3.40	0.71	0.68	0.47	—	43584	5304	24	0	0	0	0	logfile
✔	8BC4	15962	2024-12-31	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.01	1.0	0.10	18.10	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.76	3.14	2.4	0.003	0.61	0.0	0.04	16.67	0.00	2.586	3.80	1.78	1.4	98.6	0.0	1.28	0.63	0.61	0.78	3.69	16440	2167	29	0	9	270	0	logfile
✔	8BC0	15958	2024-12-29	2022-10-14	3.09	3.54	2.95	3.5	0.004	0.59	0.0	0.04	13.16	0.01	2.052	17.19	7.06	5.0	95.0	0.0	0.18	0.54	0.60	1.08	3.5	0.004	0.75	0.0	0.04	15.87	0.01	2.097	19.13	4.34	4.9	95.1	0.0	-0.08	0.76	0.54	0.60	1.01	10861	1316	4	0	6	0	0	logfile
✔	8BC1	15959	2024-12-28	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.030	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.003	0.75	0.0	0.04	15.38	0.01	2.193	13.90	2.25	3.4	96.6	0.0	0.77	1.04	0.39	0.54	1.44	8684	1054	4	0	6	0	0	logfile
✔	8ESV	28580	2024-12-28	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	19.21	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	1.9	0.005	0.73	0.0	0.05	17.68	0.00	1.911	11.22	4.55	7.7	92.1	0.2	-0.78	0.29	0.77	0.77	2.24	7222	933	8	0	13	0	0	logfile
✔	8BC2	15960	2024-12-31	2022-10-14	2.6	2.43	2.67	2.8	0.012	1.66	0.0	0.10	18.31	0.03	2.311	3.08	13.21	4.2	95.8	0.0	-4.52	0.75	0.85	4.09	2.7	0.003	0.56	0.0	0.04	17.25	0.00	2.469	4.00	1.70	1.8	98.2	0.0	1.80	1.05	0.76	0.86	4.32	16770	2180	20	0	0	460	0	logfile

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