Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ESB	28574	2024-12-27	2022-10-13	3.12	3.62	3.10	3.5	0.006	0.63	0.0	0.05	14.31	0.00	2.245	5.09	0.00	4.5	95.5	0.0	-2.63	0.67	0.86	3.83	3.5	0.004	0.57	0.0	0.04	16.15	0.00	2.488	2.63	1.81	3.2	96.8	0.0	0.10	0.92	0.65	0.85	3.61	3140	384	3	0	0	0	0	logfile
✔	8ES9	28572	2024-12-31	2022-10-13	3.25	3.52	3.21	3.4	0.005	0.70	0.0	0.05	14.59	0.00	2.176	6.90	0.00	5.4	94.6	0.1	0.26	0.71	0.84	2.76	3.4	0.003	0.64	0.0	0.05	15.56	0.00	2.352	5.83	1.64	4.6	95.3	0.1	0.71	0.36	0.73	0.88	2.52	11844	1459	17	0	14	0	0	logfile
✔	8ESC	28575	2024-12-26	2022-10-13	3.1	3.13	3.05	3.2	0.002	0.51	0.0	0.04	14.00	0.00	2.156	6.96	0.02	5.0	95.0	0.0	-0.12	0.79	0.79	2.12	3.1	0.004	0.67	1.0	0.04	15.95	0.00	2.006	7.35	1.40	4.6	95.4	0.0	0.74	0.51	0.84	0.86	1.89	43279	5300	7	0	3	0	0	logfile
✔	8ESA	28573	2024-12-27	2022-10-13	3.4	3.68	3.37	3.6	0.004	0.49	0.0	0.04	14.83	0.00	2.243	5.75	0.30	4.0	96.0	0.0	-0.99	0.65	0.84	2.85	3.6	0.003	0.52	0.0	0.04	16.42	0.00	2.473	4.60	0.90	2.9	97.1	0.0	-0.21	0.41	0.64	0.86	2.25	3140	384	3	0	0	0	0	logfile
✔	8ES8	28571	2024-12-30	2022-10-13	2.65	2.71	2.68	2.7	0.004	0.71	0.0	0.05	14.96	0.00	2.142	6.32	0.08	3.4	96.6	0.0	0.76	0.72	0.86	3.52	2.7	0.006	0.80	0.0	0.05	16.11	0.00	2.387	6.62	2.25	4.1	95.9	0.0	0.41	0.97	0.72	0.89	3.59	11976	1464	21	0	19	0	0	logfile
✔	8ES7	28570	2024-12-28	2022-10-13	3.04	3.42	3.02	3.3	0.004	0.68	0.0	0.05	16.73	0.00	2.133	6.93	0.10	5.9	94.1	0.0	0.86	0.67	0.85	3.35	3.3	0.003	0.62	0.0	0.04	15.34	0.00	2.463	4.12	1.36	5.2	94.8	0.0	0.95	0.34	0.67	0.87	3.14	8822	1080	18	0	19	0	0	logfile
✔	8ERL	28554	2024-12-27	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.79	0.0	0.05	15.79	0.00	2.578	17.65	3.43	8.4	91.6	0.0	-2.38	1.03	0.87	0.79	-0.22	6600	830	2	0	0	0	0	logfile
✔	8H5B	34490	2024-12-28	2022-10-12	4.03	4.23	3.98	4.1	0.005	0.74	0.0	0.04	12.98	0.01	1.882	23.17	0.00	4.5	95.5	0.0	-1.67	0.79	0.73	—	4.1	0.004	0.71	0.0	0.04	13.43	0.00	2.392	17.10	0.00	3.6	96.4	0.0	0.42	1.05	0.78	0.72	—	8570	1075	2	0	0	0	0	logfile
✔	8ERP	28557	2024-12-27	2022-10-12	3.7	3.96	3.35	4.0	0.004	0.86	0.0	0.04	19.42	0.01	2.016	7.49	0.00	5.8	94.2	0.0	0.16	0.66	0.80	2.15	4.0	0.004	0.96	1.0	0.04	16.87	0.01	1.979	4.11	3.49	7.5	92.5	0.0	1.75	1.22	0.68	0.81	1.81	6056	728	4	0	26	0	0	logfile
✔	8ERQ	28558	2024-12-27	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.04	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.003	0.65	0.0	0.04	13.74	0.00	2.615	2.94	3.80	3.6	96.4	0.0	-0.08	1.85	0.64	0.83	3.73	3178	423	4	0	1	0	0	logfile
✔	8BB1	15953	2024-12-31	2022-10-12	2.8	3.65	2.86	3.3	0.003	0.42	0.0	0.04	10.05	0.01	2.226	3.53	0.71	2.0	98.0	0.0	0.54	0.89	0.88	4.07	3.3	0.003	0.59	0.0	0.04	12.67	0.00	2.518	6.78	1.18	1.9	98.1	0.0	0.94	2.28	0.88	0.86	3.39	16168	2100	20	0	4	24	0	logfile
✔	8ERC	28552	2024-12-27	2022-10-11	3.7	3.47	3.08	3.7	0.003	0.67	0.0	0.04	12.91	0.00	2.115	8.25	0.00	2.3	97.7	0.0	1.99	0.51	0.65	1.22	3.7	0.003	0.71	0.0	0.04	16.47	0.00	2.599	9.53	2.49	2.3	97.7	0.0	2.20	0.52	0.52	0.65	0.70	3510	441	1	0	0	0	0	logfile
✔	8H4U	34484	2024-12-28	2022-10-11	3.5	3.38	3.50	3.4	0.002	0.59	0.0	0.04	18.36	0.00	2.218	8.59	1.28	5.1	94.9	0.0	0.05	0.75	0.82	1.33	3.4	0.003	0.60	0.0	0.04	18.61	0.00	2.447	7.77	2.56	5.6	94.4	0.0	1.75	1.01	0.74	0.81	0.55	7944	959	1	0	0	0	0	logfile
✔	8BAH	15948	2024-12-30	2022-10-11	4.13	4.37	4.14	4.2	0.003	0.54	0.0	0.04	10.66	0.00	1.951	2.05	0.00	2.2	97.8	0.0	0.61	0.73	0.72	—	4.2	0.003	0.52	0.0	0.04	12.16	0.00	1.938	4.53	0.00	3.9	96.1	0.0	0.19	0.66	0.73	0.73	—	13675	855	5	0	4	0	6801	logfile
✔	8H4K	34479	2024-12-28	2022-10-10	3.1	2.32	3.10	3.1	0.006	0.73	0.0	0.05	13.57	0.00	2.061	4.14	0.00	5.5	94.5	0.0	0.17	0.77	0.81	3.47	3.0	0.002	0.53	0.0	0.04	14.82	0.00	2.489	3.20	0.71	3.6	96.4	0.0	1.21	0.31	0.76	0.82	2.54	8078	1055	6	0	1	0	0	logfile
✔	8H4i	34478	2024-12-28	2022-10-10	3.06	2.31	3.09	3.0	0.012	1.04	0.0	0.06	13.70	0.01	2.147	4.38	0.00	5.3	94.7	0.0	-0.34	0.77	0.83	3.22	3.0	0.003	0.59	0.0	0.04	14.92	0.00	2.472	2.54	0.95	3.1	96.9	0.0	1.19	0.33	0.78	0.84	2.26	7965	1035	6	0	1	0	0	logfile
✔	8H3Q	34473	2024-12-31	2022-10-09	3.76	2.75	3.79	2.8	0.007	1.14	5.0	0.06	20.58	0.01	2.017	18.05	10.27	11.0	88.1	0.9	-1.84	0.70	0.65	0.62	1.9	0.004	1.00	0.0	0.05	19.09	0.01	2.029	20.03	4.96	9.5	90.3	0.3	-0.28	1.25	0.71	0.70	0.85	15511	1956	4	0	3	0	0	logfile
✔	8EQS	28544	2024-12-27	2022-10-09	3.1	3.53	3.10	3.4	0.005	0.74	0.0	0.04	19.17	0.00	2.219	12.31	0.00	2.8	97.2	0.0	0.01	0.66	0.82	2.72	3.4	0.003	0.57	0.0	0.04	18.98	0.00	2.585	5.12	2.06	1.9	98.1	0.0	2.12	1.16	0.70	0.87	2.16	3654	438	6	0	2	0	0	logfile
✔	8EQT	28545	2024-12-27	2022-10-09	3.4	3.89	3.34	3.7	0.006	0.89	0.0	0.05	17.01	0.00	2.213	11.78	0.00	2.1	97.9	0.0	0.61	0.62	0.82	3.25	3.7	0.003	0.52	0.0	0.04	18.98	0.00	2.486	8.17	4.62	1.1	98.9	0.0	2.02	1.17	0.65	0.86	2.45	3206	382	4	0	4	0	0	logfile
✔	8H3V	34475	2024-12-26	2022-10-09	4.5	4.64	4.91	4.5	0.030	2.79	84.0	0.14	20.27	0.02	0.972	180.47	7.38	33.8	60.7	5.5	-7.34	0.74	0.61	—	4.5	0.005	1.05	0.0	0.05	18.36	0.01	2.113	23.55	0.02	16.0	83.2	0.8	-4.01	1.38	0.77	0.68	—	46048	5325	15	208	0	0	0	logfile

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