Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H3U	32828	2024-12-27	2022-10-09	4.7	3.74	—	2.6	0.002	0.56	0.0	0.04	7.77	0.00	2.279	8.94	1.98	5.8	94.1	0.1	-3.28	0.52	0.42	—	2.4	0.005	0.77	0.0	0.05	9.73	0.00	2.426	21.50	0.00	10.8	89.2	0.0	-2.00	0.91	0.57	0.50	—	6383	818	2	0	0	0	0	logfile
✔	8H3V	34475	2024-12-26	2022-10-09	4.5	4.64	4.91	4.5	0.030	2.79	84.0	0.14	20.27	0.02	0.972	180.47	7.38	33.8	60.7	5.5	-7.34	0.74	0.61	—	4.5	0.005	1.05	0.0	0.05	18.36	0.01	2.113	23.55	0.02	16.0	83.2	0.8	-4.01	1.38	0.77	0.68	—	46048	5325	15	208	0	0	0	logfile
✔	8EQU	28546	2024-12-27	2022-10-09	2.8	3.03	2.80	3.0	0.004	0.79	0.0	0.04	14.51	0.00	2.025	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.004	0.63	0.0	0.04	15.16	0.00	2.527	5.95	1.64	1.3	98.7	0.0	0.51	1.09	0.68	0.83	2.22	5764	542	10	0	318	0	0	logfile
✔	8EQV	28547	2024-12-30	2022-10-09	3.64	4.53	3.76	4.0	0.003	0.78	0.0	0.04	16.23	0.00	2.188	12.26	0.13	8.3	91.5	0.2	-1.97	0.88	0.83	1.37	4.0	0.004	0.66	0.0	0.04	16.44	0.00	2.497	7.76	1.92	7.2	92.6	0.2	-0.76	0.59	0.88	0.84	1.60	13974	1765	5	0	0	0	0	logfile
✔	8EQJ	28538	2024-12-27	2022-10-07	3.0	3.22	2.93	3.2	0.005	0.94	0.0	0.04	24.65	0.01	2.219	9.35	0.00	2.7	97.3	0.0	-0.19	0.47	0.74	2.78	3.2	0.004	0.58	0.0	0.04	18.37	0.00	2.588	7.32	1.72	0.5	99.5	0.0	1.43	1.15	0.61	0.88	3.24	3232	384	4	0	4	0	0	logfile
✔	8H2T	34443	2024-12-30	2022-10-07	2.59	3.14	2.68	3.0	0.003	0.59	0.0	0.04	16.32	0.00	2.043	5.51	1.52	3.0	96.9	0.1	0.43	0.76	0.86	4.68	3.0	0.003	0.58	0.0	0.04	16.56	0.00	2.067	4.27	0.86	3.7	96.1	0.2	0.79	0.19	0.75	0.85	4.12	14370	1776	9	0	9	0	0	logfile
✔	8EQF	28537	2024-12-27	2022-10-07	3.16	2.26	3.09	2.1	0.005	0.57	0.0	0.04	14.57	0.00	1.998	5.82	0.00	5.5	94.5	0.0	-0.38	0.75	0.81	3.52	2.0	0.002	0.56	0.0	0.04	14.12	0.00	2.422	4.44	1.10	2.9	97.1	0.0	0.04	0.87	0.76	0.81	3.59	3348	422	4	0	2	0	0	logfile
✔	8B9L	15935	2024-12-30	2022-10-06	3.45	4.42	3.50	3.9	0.004	0.78	1.0	0.05	17.52	0.02	2.155	14.92	1.18	8.4	90.8	0.8	-0.21	0.77	0.59	0.69	4.0	0.003	0.92	1.0	0.05	17.44	0.01	2.505	16.90	2.89	7.7	91.5	0.8	-0.58	1.83	0.85	0.77	0.76	6826	862	1	0	0	0	0	logfile
✔	8EPX	28534	2024-12-31	2022-10-06	3.15	3.30	3.06	3.2	0.004	0.58	0.0	0.04	24.05	0.00	1.297	7.63	4.99	5.1	94.9	0.0	-0.23	0.79	0.84	0.94	3.2	0.003	0.73	0.0	0.04	23.79	0.00	2.337	5.83	4.01	5.4	94.6	0.0	0.24	0.18	0.79	0.84	1.17	15457	1672	14	144	2	0	0	logfile
✔	8H2G	34437	2024-12-28	2022-10-06	3.01	3.20	3.02	3.2	0.003	0.57	0.0	0.04	16.85	0.00	2.123	9.49	0.61	3.8	96.2	0.0	0.07	0.64	0.76	1.58	3.2	0.003	0.64	0.0	0.04	17.36	0.00	2.523	7.15	5.51	4.2	95.7	0.1	0.04	1.34	0.64	0.78	1.69	9023	1145	6	0	1	0	0	logfile
✔	8B9G	15931	2024-12-30	2022-10-06	2.86	3.74	2.90	3.4	0.005	1.20	0.0	0.04	17.07	0.00	1.632	9.22	1.43	2.4	97.4	0.2	1.29	0.85	0.82	3.17	3.3	0.003	0.62	0.0	0.04	16.86	0.00	2.480	5.22	0.48	1.8	98.1	0.1	1.77	0.99	0.87	0.87	2.67	7782	953	3	10	2	5	0	logfile
✔	8B9i	15932	2024-12-31	2022-10-06	2.95	3.92	2.99	3.5	0.011	1.24	0.0	0.05	19.48	0.01	1.963	11.55	2.31	3.6	96.3	0.1	0.95	0.84	0.75	2.31	3.6	0.003	0.73	0.0	0.04	18.10	0.00	2.037	9.12	1.27	4.1	95.8	0.1	0.93	1.79	0.84	0.86	2.37	8026	984	4	11	3	5	0	logfile
✔	8EPM	28530	2024-12-31	2022-10-06	3.1	3.22	3.12	3.2	0.004	0.55	0.0	0.04	18.04	0.00	2.203	7.74	0.55	5.8	94.1	0.1	-0.05	0.62	0.84	2.62	3.2	0.003	0.60	0.0	0.04	17.15	0.00	2.332	6.40	3.37	5.4	94.6	0.1	0.41	1.17	0.61	0.84	2.62	15458	1939	9	0	17	0	0	logfile
✔	8B9J	15933	2024-12-30	2022-10-06	3.45	4.21	3.53	3.9	0.005	1.37	0.0	0.05	17.47	0.02	2.019	13.74	1.18	7.2	92.1	0.7	-0.47	0.83	0.73	1.65	3.9	0.003	0.69	0.0	0.04	17.32	0.00	1.650	10.56	1.96	7.4	92.3	0.4	0.64	0.97	0.87	0.82	1.42	6879	864	2	0	3	0	0	logfile
✔	8B8T	15921	2024-12-28	2022-10-05	4.2	3.64	4.09	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.1	0.003	0.71	0.0	0.04	13.53	0.00	2.383	5.91	0.00	3.0	97.0	0.0	0.74	0.51	0.73	0.76	—	7180	989	4	0	0	0	0	logfile
✔	8B9F	15930	2024-12-28	2022-10-05	3.93	4.21	3.90	4.1	0.006	0.76	1.0	0.06	13.30	0.01	2.185	8.71	1.45	2.4	97.3	0.3	-1.28	0.46	0.63	1.86	4.1	0.006	1.20	1.0	0.05	15.99	0.00	2.059	13.75	3.88	2.3	97.7	0.0	-0.54	0.90	0.49	0.71	1.81	5533	709	5	0	1	0	0	logfile
✔	8EPA	28523	2024-12-27	2022-10-05	3.4	4.08	3.33	3.8	0.004	0.69	0.0	0.05	15.76	0.00	2.184	14.18	0.18	9.3	90.4	0.3	-2.16	0.75	0.75	1.53	3.8	0.003	0.76	0.0	0.05	15.88	0.00	2.381	12.16	1.79	8.6	91.0	0.3	-2.03	0.39	0.76	0.77	1.21	5045	637	6	0	2	0	0	logfile
✔	8B8J	15914	2024-12-30	2022-10-04	2.96	3.60	2.92	3.4	0.003	0.46	0.0	0.04	9.83	0.00	2.030	6.94	1.25	2.4	97.6	0.0	2.21	0.60	0.76	1.84	3.4	0.003	0.63	0.0	0.04	13.51	0.00	2.238	7.75	1.96	2.3	97.7	0.0	1.75	1.47	0.64	0.81	2.40	11686	1418	4	0	6	0	0	logfile
✔	8B8G	15913	2024-12-30	2022-10-04	3.39	3.99	3.34	3.8	0.004	0.56	0.0	0.04	13.75	0.01	2.026	11.04	7.59	4.2	95.8	0.0	0.87	0.66	0.82	2.32	3.8	0.003	0.59	0.0	0.04	15.32	0.01	2.527	9.17	3.41	3.4	96.6	0.0	1.30	1.90	0.64	0.81	1.90	12086	1464	2	0	0	0	0	logfile
✔	8B8M	15917	2024-12-30	2022-10-04	3.49	3.89	3.36	3.7	0.003	0.53	0.0	0.04	12.08	0.00	2.148	9.98	4.46	3.7	96.3	0.0	1.08	0.63	0.76	1.75	3.8	0.003	0.65	0.0	0.04	14.92	0.00	2.261	9.17	2.27	3.4	96.6	0.0	0.89	1.51	0.62	0.76	1.17	11758	1423	4	0	6	0	0	logfile

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