Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B8J	15914	2024-12-30	2022-10-04	2.96	3.60	2.92	3.4	0.003	0.46	0.0	0.04	9.83	0.00	2.030	6.94	1.25	2.4	97.6	0.0	2.21	0.60	0.76	1.84	3.4	0.003	0.63	0.0	0.04	13.51	0.00	2.238	7.75	1.96	2.3	97.7	0.0	1.75	1.47	0.64	0.81	2.40	11686	1418	4	0	6	0	0	logfile
✔	8EoP	28451	2024-12-30	2022-10-04	3.7	3.39	3.69	3.8	0.003	0.62	0.0	0.04	15.22	0.00	2.001	6.86	0.00	5.6	94.3	0.1	0.22	0.60	0.77	1.59	3.8	0.003	0.62	0.0	0.04	15.56	0.00	1.974	5.62	1.87	5.6	94.4	0.0	0.73	1.40	0.63	0.78	1.26	13265	1687	4	0	15	0	0	logfile
✔	8B8K	15916	2024-12-30	2022-10-04	3.01	3.58	2.85	3.4	0.003	0.50	0.0	0.04	11.83	0.00	2.111	6.75	2.92	2.6	97.4	0.0	1.53	0.63	0.81	3.01	3.4	0.004	0.58	0.0	0.04	14.47	0.00	2.258	6.26	2.62	3.1	96.9	0.0	1.58	0.63	0.62	0.80	2.89	12324	1482	4	0	8	0	0	logfile
✔	8B8M	15917	2024-12-30	2022-10-04	3.49	3.89	3.36	3.7	0.003	0.53	0.0	0.04	12.08	0.00	2.148	9.98	4.46	3.7	96.3	0.0	1.08	0.63	0.76	1.75	3.8	0.003	0.65	0.0	0.04	14.92	0.00	2.261	9.17	2.27	3.4	96.6	0.0	0.89	1.51	0.62	0.76	1.17	11758	1423	4	0	6	0	0	logfile
✔	8H1P	34430	2024-12-31	2022-10-03	3.48	3.37	3.43	3.5	0.003	0.56	0.0	0.04	18.45	0.00	2.208	10.09	0.00	0.5	99.5	0.0	0.52	0.71	0.79	0.67	3.4	0.003	0.56	0.0	0.04	18.04	0.00	2.432	7.69	1.66	2.8	97.2	0.0	0.89	0.59	0.70	0.79	1.36	15950	2024	11	0	0	0	0	logfile
✔	8B7V	15903	2024-12-29	2022-10-03	3.0	3.71	2.99	3.4	0.015	1.80	8.0	0.11	15.92	0.02	2.409	0.05	1.76	2.6	96.7	0.6	-0.16	0.76	0.73	6.06	3.4	0.005	0.68	0.0	0.04	16.28	0.00	2.477	3.95	0.39	2.4	97.5	0.2	-0.64	0.61	0.84	0.91	5.55	10050	1263	3	0	0	0	0	logfile
✔	8EoJ	28377	2024-12-29	2022-10-03	3.07	3.47	3.19	3.2	0.002	0.55	0.0	0.04	11.26	0.00	2.216	7.60	3.76	4.1	95.9	0.0	-1.48	0.69	0.60	0.95	3.2	0.003	0.67	0.0	0.04	14.64	0.00	2.499	13.91	2.74	4.9	95.1	0.0	-0.42	1.71	0.70	0.61	0.77	9327	1219	2	0	0	0	0	logfile
✔	8H1J	34428	2024-12-27	2022-10-03	3.1	3.36	3.20	3.3	0.005	0.53	0.0	0.03	22.06	0.00	2.232	8.41	5.19	1.7	98.3	0.0	2.19	0.62	0.67	2.02	3.3	0.004	0.55	0.0	0.04	22.41	0.00	2.187	6.35	5.19	2.2	97.8	0.0	1.12	1.43	0.73	0.80	1.66	5773	362	5	134	1	0	0	logfile
✔	8EoA	28332	2024-12-29	2022-10-02	3.9	4.51	3.97	4.3	0.004	0.58	0.0	0.04	11.61	0.00	1.718	7.88	1.64	3.4	96.6	0.0	0.27	0.82	0.81	1.51	4.3	0.004	0.78	0.0	0.04	15.74	0.00	1.844	13.04	2.35	3.2	96.8	0.0	0.11	1.56	0.82	0.84	1.20	11535	1421	5	0	4	0	0	logfile
✔	8EoB	28333	2024-12-29	2022-10-02	3.1	3.53	3.19	3.4	0.005	0.61	0.0	0.04	11.57	0.00	1.945	7.00	1.78	2.6	97.4	0.0	0.42	0.76	0.84	3.12	3.4	0.003	0.52	0.0	0.04	14.20	0.00	1.955	5.57	1.78	2.3	97.7	0.0	1.04	0.52	0.76	0.84	2.61	10141	1245	4	0	4	0	0	logfile
✔	8B7Q	15899	2024-12-27	2022-09-30	4.02	4.26	3.86	4.2	0.003	0.60	0.0	0.04	9.87	0.00	2.234	4.41	2.94	3.9	95.6	0.5	0.29	0.66	0.80	—	4.2	0.004	0.70	0.0	0.05	12.55	0.00	2.483	7.40	0.00	4.2	95.8	0.0	1.08	0.93	0.69	0.82	—	3511	441	4	0	1	0	0	logfile
✔	8H0P	34413	2024-12-28	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.61	0.00	2.502	7.92	2.04	2.9	97.1	0.0	-0.07	0.79	0.57	0.78	2.46	8932	1137	6	0	0	0	0	logfile
✔	8H0V	34415	2024-12-27	2022-09-30	3.8	4.36	3.67	3.0	0.006	0.87	0.0	0.05	21.46	0.01	1.954	10.09	0.05	3.8	96.1	0.1	-0.59	0.82	0.61	0.55	3.0	0.003	0.68	0.0	0.04	22.34	0.00	1.952	13.02	1.64	4.0	95.9	0.0	0.16	1.74	0.82	0.67	0.52	46571	4766	30	425	9	0	0	logfile
✔	8ENQ	28276	2024-12-27	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.006	1.14	0.0	0.05	16.41	0.00	2.473	28.61	4.42	19.0	81.0	0.0	-4.70	2.05	0.47	0.54	3.52	5593	777	7	0	0	0	0	logfile
✔	8H0W	34416	2024-12-27	2022-09-30	4.6	4.58	4.31	3.0	0.006	0.82	0.0	0.05	21.42	0.01	1.953	10.39	0.02	3.8	96.1	0.1	-0.59	0.78	0.55	—	3.0	0.004	0.72	0.0	0.04	20.98	0.00	1.869	15.73	0.02	5.0	95.0	0.0	-0.32	0.87	0.79	0.61	—	46364	4766	30	415	9	0	0	logfile
✔	8ENR	28277	2024-12-27	2022-09-30	3.8	4.03	4.04	4.3	0.004	0.80	0.0	0.05	14.88	0.00	2.204	17.13	0.89	0.7	99.3	0.0	1.04	0.43	0.37	0.94	4.2	0.006	1.05	0.0	0.05	17.71	0.00	2.444	23.63	4.02	10.0	90.0	0.0	-3.35	2.50	0.51	0.50	2.33	6392	888	8	0	0	0	0	logfile
✔	8H0Q	34414	2024-12-28	2022-09-30	3.3	3.78	3.20	3.7	0.019	0.59	0.0	0.09	9.28	0.00	2.260	7.81	0.62	1.0	99.0	0.0	-1.95	0.63	0.72	0.98	3.7	0.003	0.73	0.0	0.04	14.92	0.00	2.340	10.60	3.95	3.2	96.8	0.0	-0.06	2.76	0.67	0.83	1.87	8949	1134	7	0	3	0	0	logfile
✔	8ENE	28271	2024-12-31	2022-09-29	2.64	3.16	2.81	3.1	0.005	0.60	0.0	0.04	12.54	0.00	2.262	5.76	2.15	2.6	97.4	0.0	0.46	0.74	0.77	2.90	3.1	0.004	0.59	0.0	0.04	15.89	0.01	2.414	6.21	3.86	3.4	96.6	0.0	0.66	1.60	0.64	0.76	2.88	15404	1972	8	0	4	0	0	logfile
✔	8H0i	34412	2024-12-31	2022-09-29	2.8	4.11	2.76	3.2	0.003	0.60	2.0	0.05	14.23	0.00	2.198	7.70	0.81	2.6	97.4	0.0	0.39	0.85	0.78	3.60	3.3	0.004	0.80	0.0	0.04	15.88	0.00	2.141	6.94	1.07	2.8	97.2	0.0	0.93	0.76	0.90	0.87	3.22	15018	1710	14	38	6	0	0	logfile
✔	8EN7	28269	2024-12-31	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	1.6	0.003	0.56	0.0	0.04	15.25	0.00	2.622	3.25	0.53	1.2	98.8	0.0	5.10	0.39	0.75	0.85	7.98	37614	4128	54	0	6	2544	0	logfile

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