Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GY2	34368	2024-12-29	2022-09-21	2.5	3.19	2.59	3.0	0.007	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.003	0.63	0.0	0.04	16.99	0.00	2.212	4.80	1.89	5.8	94.2	0.0	-0.02	0.25	0.80	0.89	4.12	9943	1264	5	0	7	0	0	logfile
✔	8GY7	34371	2024-12-28	2022-09-21	3.3	2.37	3.34	2.2	0.004	0.76	2.0	0.05	15.85	0.01	2.006	10.67	0.96	4.7	95.3	0.0	0.27	0.76	0.77	2.61	2.0	0.004	0.67	0.0	0.04	16.74	0.00	2.269	10.60	4.32	4.4	95.6	0.0	0.68	0.43	0.76	0.78	2.55	7661	968	7	0	1	0	0	logfile
✔	8EKD	28199	2024-12-27	2022-09-20	3.6	3.11	3.47	3.0	0.005	0.88	0.0	0.05	19.66	0.01	2.190	21.00	1.77	6.3	93.7	0.0	-1.67	0.49	0.63	1.30	3.1	0.004	0.77	0.0	0.05	17.43	0.01	2.533	16.42	7.08	6.8	93.2	0.0	-1.24	1.35	0.50	0.64	1.47	3239	411	4	0	1	0	0	logfile
✔	8EKA	28196	2024-12-27	2022-09-20	3.7	4.02	3.72	3.9	0.003	0.68	0.0	0.04	17.36	0.00	2.209	7.61	0.26	12.3	87.4	0.3	-1.98	0.78	0.85	2.25	3.9	0.003	0.75	0.0	0.04	17.52	0.00	2.370	6.52	3.35	12.0	87.7	0.2	-2.10	0.34	0.78	0.85	2.47	7023	905	7	0	0	0	0	logfile
✔	8EKE	28200	2024-12-27	2022-09-20	3.36	3.79	3.34	3.7	0.002	0.45	0.0	0.04	10.50	0.00	2.313	5.20	2.71	2.5	97.2	0.3	-0.29	0.78	0.72	2.45	3.7	0.004	0.75	0.0	0.04	14.70	0.00	2.356	8.77	2.91	4.5	95.5	0.0	-0.60	1.10	0.78	0.73	1.60	4681	610	2	0	0	0	0	logfile
✔	8B4i	15849	2024-12-28	2022-09-20	3.32	3.85	3.38	3.7	0.004	0.62	0.0	0.04	16.41	0.00	2.205	3.85	0.24	1.5	98.5	0.0	0.59	0.62	0.85	3.66	3.6	0.003	0.68	0.0	0.04	13.92	0.00	2.516	5.87	1.58	1.9	98.1	0.0	1.51	1.02	0.60	0.82	2.88	8242	1026	14	0	9	0	0	logfile
✔	8B40	15835	2024-12-29	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.002	0.67	0.0	0.04	11.03	0.00	2.027	12.32	0.00	5.6	94.4	0.0	-0.84	1.01	0.77	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	8EK1	28192	2024-12-29	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.004	0.72	0.0	0.04	16.40	0.00	2.426	6.58	2.85	11.4	88.6	0.0	-2.02	1.00	0.80	0.84	2.69	8497	1102	7	0	0	0	0	logfile
✔	8EJK	28185	2024-12-28	2022-09-17	3.4	3.54	3.44	3.5	0.004	0.61	1.0	0.05	14.17	0.00	2.152	9.07	0.11	3.1	96.9	0.0	0.74	0.72	0.83	2.20	3.5	0.003	0.62	0.0	0.04	15.93	0.00	2.314	7.30	2.68	3.7	96.3	0.0	1.04	0.39	0.73	0.86	1.85	8594	1124	6	0	1	0	0	logfile
✔	8EJD	28178	2024-12-29	2022-09-16	3.8	4.33	3.84	4.1	0.022	1.83	0.0	0.17	17.20	0.02	2.400	2.31	0.00	4.7	95.3	0.0	-0.17	0.83	0.78	2.34	4.1	0.004	0.86	0.0	0.05	14.22	0.00	2.366	11.13	2.28	8.1	91.9	0.0	-0.04	1.90	0.83	0.78	2.07	9804	1086	36	0	87	0	0	logfile
✔	8EJH	28182	2024-12-31	2022-09-16	3.71	4.24	3.87	4.0	0.021	1.83	0.0	0.15	17.28	0.01	2.321	2.57	0.00	5.7	94.3	0.0	-0.18	0.78	0.78	2.12	4.0	0.004	0.81	0.0	0.04	14.14	0.00	2.402	8.71	2.92	5.4	94.6	0.0	-0.28	1.88	0.76	0.76	2.11	15186	1761	45	0	99	0	0	logfile
✔	8GW7	34304	2024-12-28	2022-09-16	3.3	3.48	3.35	3.8	0.004	0.79	0.0	0.06	14.00	0.01	2.220	5.74	0.39	1.3	98.7	0.0	1.51	0.61	0.78	1.67	3.7	0.003	0.65	0.0	0.04	15.60	0.00	2.612	5.74	3.27	2.0	98.0	0.0	2.46	1.31	0.61	0.79	1.63	7524	945	6	0	9	0	0	logfile
✔	8GW6	34303	2024-12-28	2022-09-16	3.3	3.39	3.36	3.7	0.004	0.60	0.0	0.05	12.88	0.00	2.397	20.00	0.65	2.2	97.8	0.0	0.70	0.59	0.80	2.71	3.7	0.003	0.61	0.0	0.04	15.26	0.00	2.464	5.27	0.65	3.0	97.0	0.0	1.04	0.96	0.58	0.80	1.46	8883	1101	6	0	6	0	0	logfile
✔	8B3J	15830	2024-12-27	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.60	0.0	0.04	16.35	0.00	2.448	4.30	3.24	5.6	94.4	0.0	-2.13	0.26	0.43	0.87	2.66	5688	718	3	0	0	0	0	logfile
✔	8EJE	28179	2024-12-29	2022-09-16	3.69	3.95	3.70	3.9	0.023	2.14	0.0	0.16	15.07	0.01	2.317	2.39	0.00	6.0	94.0	0.0	-0.11	0.82	0.79	2.65	3.8	0.004	0.98	0.0	0.05	15.38	0.00	2.401	11.36	4.52	9.7	90.3	0.0	-0.65	1.02	0.81	0.78	2.02	9426	1068	33	0	66	0	0	logfile
✔	8EJi	28183	2024-12-29	2022-09-16	3.81	4.24	3.86	4.0	0.022	1.85	3.0	0.15	16.97	0.02	2.309	3.30	0.00	4.1	95.9	0.0	0.23	0.80	0.80	2.42	4.0	0.003	0.79	0.0	0.05	13.80	0.00	2.481	10.83	1.78	4.5	95.4	0.1	0.15	2.71	0.79	0.79	1.81	11023	1257	32	0	78	0	0	logfile
✔	8EJ5	28176	2024-12-27	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.004	0.77	0.0	0.05	13.65	0.00	2.338	14.79	0.00	4.0	95.7	0.3	0.08	1.83	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	8EJC	28177	2024-12-28	2022-09-16	3.0	3.01	3.04	3.1	0.006	0.64	0.0	0.04	13.37	0.00	2.199	9.48	0.00	3.6	96.4	0.0	1.20	0.69	0.84	3.08	3.2	0.003	0.64	0.0	0.04	15.89	0.00	2.533	6.38	1.99	2.5	97.5	0.0	1.50	0.39	0.69	0.85	1.98	8659	1132	6	0	1	0	0	logfile
✔	8B3A	15824	2024-12-27	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	8B3G	15827	2024-12-26	2022-09-16	4.4	9.95	4.61	4.4	0.005	0.67	0.0	0.04	13.90	0.00	0.968	8.01	0.13	7.3	92.7	0.0	-2.07	0.92	0.76	—	4.4	0.006	0.78	0.0	0.04	13.65	0.00	2.261	20.97	0.00	9.9	90.1	0.0	-2.42	2.92	0.93	0.83	—	42828	2685	9	0	3	0	21416	logfile

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