Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DY7	27777	2024-12-30	2022-08-03	3.18	3.44	3.26	3.4	0.003	0.65	0.0	0.04	17.41	0.00	1.507	3.64	0.00	4.3	95.7	0.0	0.22	0.71	0.81	2.62	3.4	0.003	0.63	0.0	0.04	18.41	0.00	1.970	3.20	0.40	4.0	96.0	0.0	0.49	0.32	0.73	0.83	2.38	61085	3612	14	149	5	0	29915	logfile
✔	8DYA	27779	2024-12-28	2022-08-03	3.67	4.01	3.65	4.0	0.010	1.49	3.0	0.10	10.00	0.01	1.995	1.41	0.56	3.9	95.6	0.5	0.63	0.63	0.66	2.75	4.0	0.004	0.66	0.0	0.04	13.30	0.00	2.589	4.43	3.17	4.1	95.7	0.3	1.25	0.73	0.70	0.75	2.66	7896	1164	6	0	18	0	0	logfile
✔	8AMF	15525	2024-12-29	2022-08-03	3.8	4.56	—	4.4	0.007	0.99	0.0	0.07	18.67	0.01	2.281	6.91	0.77	7.6	92.4	0.0	-3.87	0.55	0.84	1.57	4.4	0.004	0.74	0.0	0.05	19.53	0.00	2.339	9.38	2.50	5.8	94.2	0.0	-0.92	1.36	0.55	0.83	1.44	10507	1332	10	20	4	0	0	logfile
✔	8DY9	27778	2024-12-30	2022-08-03	3.12	3.48	3.21	3.4	0.003	0.52	1.0	0.04	17.51	0.00	2.007	5.95	0.00	4.5	95.5	0.0	0.42	0.76	0.78	2.45	3.4	0.004	0.53	1.0	0.04	18.21	0.00	2.184	2.99	0.48	5.1	94.9	0.0	0.39	0.21	0.77	0.80	2.28	63435	3777	16	144	5	0	31140	logfile
✔	7YoV	33988	2024-12-30	2022-08-02	3.25	3.39	3.20	3.3	0.011	1.17	0.0	0.06	11.20	0.01	2.102	6.46	1.14	7.6	92.4	0.0	-3.95	0.72	0.76	2.51	3.3	0.003	0.65	0.0	0.04	15.23	0.00	2.410	9.17	1.47	3.2	96.8	0.0	0.18	2.49	0.74	0.81	1.45	13232	1683	5	0	0	0	0	logfile
✔	8DXQ	27773	2024-12-29	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.003	0.60	0.0	0.04	5.08	0.00	2.517	0.20	0.00	10.4	89.6	0.0	0.07	0.31	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	8DXR	27774	2024-12-29	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.48	0.0	0.04	2.98	0.00	2.602	0.60	0.00	5.1	94.8	0.1	1.93	0.41	0.67	0.70	—	10435	2101	7	0	0	0	0	logfile
✔	8DWV	27761	2024-12-31	2022-08-02	3.6	4.99	3.80	3.6	0.004	0.74	4.0	0.05	14.51	0.00	2.076	6.82	0.28	8.8	90.6	0.6	-1.14	0.69	0.46	1.16	3.7	0.006	0.89	0.0	0.05	16.20	0.00	2.498	24.31	1.16	10.7	88.9	0.4	-1.55	2.24	0.89	0.82	0.77	16480	2084	6	0	0	0	0	logfile
✔	7YoT	33986	2024-12-30	2022-08-02	3.0	3.12	2.07	3.1	0.009	1.03	0.0	0.06	10.47	0.01	2.279	4.54	0.66	4.2	95.8	0.0	-3.64	0.71	0.85	3.78	3.1	0.003	0.57	0.0	0.04	15.32	0.00	2.489	5.93	2.12	2.6	97.4	0.0	0.60	0.60	0.68	0.85	2.54	12182	1551	5	0	0	0	0	logfile
✔	7YP1	33992	2024-12-27	2022-08-02	3.54	3.78	3.54	3.8	0.010	1.05	0.0	0.06	14.05	0.01	2.275	3.74	0.24	9.9	90.1	0.0	-5.19	0.66	0.84	3.95	3.8	0.004	0.60	0.0	0.04	16.02	0.00	2.576	4.94	3.13	5.9	94.1	0.0	-2.48	0.48	0.66	0.84	2.48	3770	490	4	0	0	0	0	logfile
✔	7YoZ	33991	2024-12-28	2022-08-02	4.3	4.57	4.38	4.3	0.003	0.55	0.0	0.03	27.41	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.004	0.72	0.0	0.04	29.17	0.00	2.531	17.55	0.00	1.4	98.6	0.0	0.69	1.77	0.89	0.83	—	9752	594	10	242	0	0	0	logfile
✔	7YP2	33994	2024-12-27	2022-08-02	3.52	3.74	3.49	3.7	0.007	0.93	0.0	0.05	14.66	0.01	2.294	3.19	0.00	8.0	92.0	0.0	-4.80	0.68	0.87	2.84	3.7	0.003	0.58	0.0	0.04	15.57	0.00	2.571	4.50	1.49	5.7	94.3	0.0	-1.25	0.43	0.63	0.85	2.92	4248	546	3	0	0	0	0	logfile
✔	7YoX	33989	2024-12-30	2022-08-02	3.95	4.33	4.09	4.1	0.006	1.31	8.0	0.10	27.06	0.01	0.786	33.58	46.70	1.0	98.8	0.2	2.84	0.82	0.70	0.48	4.1	0.004	0.81	0.0	0.05	19.20	0.00	2.341	20.84	6.72	2.8	97.2	0.0	0.10	1.07	0.84	0.77	0.36	13878	1749	6	0	0	0	0	logfile
✔	7YP7	33995	2024-12-30	2022-08-02	3.1	3.27	3.27	3.2	0.007	0.95	0.0	0.06	15.19	0.01	1.823	5.31	1.44	7.7	91.7	0.6	-4.81	0.78	0.83	3.48	3.2	0.003	0.67	0.0	0.04	16.30	0.00	2.540	5.05	3.00	4.7	95.0	0.3	-0.91	1.27	0.81	0.86	2.78	7909	1007	5	0	0	0	0	logfile
✔	7YoY	33990	2024-12-27	2022-08-02	3.64	4.09	3.73	4.0	0.008	1.11	0.0	0.07	13.20	0.01	2.303	3.96	0.20	9.6	90.4	0.0	-3.78	0.66	0.80	3.17	4.0	0.003	0.76	0.0	0.04	15.16	0.00	2.242	8.62	2.65	6.2	93.8	0.0	-1.73	0.54	0.68	0.81	2.76	4517	593	5	0	0	0	0	logfile
✔	8DWi	27755	2024-12-27	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.60	0.01	2.552	10.92	1.91	5.5	94.5	0.0	-0.61	1.64	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile
✔	7Yoo	33985	2024-12-28	2022-08-01	3.11	2.28	—	3.2	0.003	0.44	0.0	0.04	13.43	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.55	0.0	0.04	15.17	0.00	2.563	3.93	1.89	3.0	97.0	0.0	0.61	0.93	0.79	0.84	3.19	9188	1169	6	0	0	0	0	logfile
✔	8DWG	27753	2024-12-28	2022-08-01	2.71	2.08	2.72	1.8	0.005	0.60	0.0	0.04	12.58	0.00	2.106	6.68	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.9	0.003	0.57	0.0	0.04	14.83	0.00	2.538	4.29	2.81	3.8	96.2	0.0	1.27	0.34	0.80	0.83	3.76	8350	1101	7	0	1	0	0	logfile
✔	7YoJ	33983	2024-12-29	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	24.11	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.63	0.0	0.03	23.71	0.00	2.334	10.28	2.46	4.2	95.8	0.0	0.32	1.01	0.78	0.81	1.84	11545	867	4	216	0	0	0	logfile
✔	8DWH	27754	2024-12-27	2022-08-01	3.25	2.21	3.25	2.1	0.004	0.57	0.0	0.04	12.92	0.00	2.129	7.56	0.00	3.4	96.6	0.0	-0.94	0.73	0.78	4.11	2.1	0.004	0.62	0.0	0.04	15.37	0.00	2.415	5.33	2.33	3.4	96.6	0.0	1.01	0.96	0.74	0.80	3.23	6444	858	5	0	1	0	0	logfile

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