Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DZQ	27805	2024-12-28	2022-08-08	2.82	2.18	2.79	2.1	0.004	0.75	0.0	0.05	13.13	0.00	2.244	6.40	0.23	6.2	93.8	0.0	-0.46	0.74	0.71	3.49	1.8	0.002	0.60	0.0	0.04	15.47	0.00	2.308	7.13	1.83	5.4	94.6	0.0	0.25	0.32	0.75	0.74	3.03	8342	1100	6	0	1	0	0	logfile
✔	7YQM	34029	2024-12-27	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	3.2	0.003	0.55	0.0	0.04	15.66	0.00	2.623	5.33	1.17	3.7	96.3	0.0	0.64	1.48	0.68	0.80	3.46	5656	723	1	0	0	0	0	logfile
✔	8AoV	15553	2024-12-26	2022-08-08	2.48	2.62	2.54	2.6	0.003	0.57	0.0	0.04	16.27	0.00	2.044	8.08	2.01	3.0	97.0	0.0	-0.35	0.74	0.84	3.85	2.6	0.007	0.70	0.0	0.05	16.52	0.01	1.895	7.49	2.73	3.8	96.2	0.0	-0.06	0.21	0.74	0.83	4.25	42900	5352	36	0	24	228	0	logfile
✔	7YQK	34028	2024-12-30	2022-08-07	3.38	4.15	3.41	3.2	0.005	0.66	0.0	0.04	26.06	0.00	2.105	13.31	0.00	4.6	95.3	0.1	-0.71	0.92	0.87	2.04	3.2	0.004	0.71	0.0	0.04	26.88	0.00	2.090	12.39	2.44	4.4	95.6	0.0	0.51	0.50	0.93	0.89	1.36	13745	987	13	290	0	0	0	logfile
✔	8DZJ	27801	2024-12-28	2022-08-07	2.9	3.60	2.84	3.0	0.004	0.60	0.0	0.04	21.35	0.00	2.209	12.65	0.38	1.5	98.5	0.0	0.94	0.77	0.71	3.07	3.0	0.004	0.64	0.0	0.04	21.38	0.00	2.221	12.09	1.51	2.0	98.0	0.0	1.38	0.57	0.85	0.81	2.69	9030	613	6	190	1	0	0	logfile
✔	7YQC	34023	2024-12-29	2022-08-06	2.82	2.99	2.80	3.0	0.013	1.86	24.0	0.13	16.60	0.01	2.497	5.68	9.34	1.3	98.7	0.0	3.07	0.65	0.81	2.22	3.0	0.003	0.75	0.0	0.04	17.37	0.00	2.458	4.65	3.47	1.0	99.0	0.0	3.54	0.45	0.65	0.82	2.15	11396	1386	7	0	0	0	0	logfile
✔	8DZ5	27789	2024-12-28	2022-08-06	3.84	4.27	3.76	4.1	0.003	0.71	0.0	0.04	15.29	0.00	2.167	12.59	0.62	5.4	94.6	0.0	-0.63	0.74	0.82	2.12	4.1	0.006	0.80	0.0	0.05	16.30	0.00	2.497	13.10	3.94	7.9	92.1	0.0	-0.80	1.25	0.75	0.83	1.88	8950	1155	11	0	0	0	0	logfile
✔	8DZ3	27787	2024-12-30	2022-08-06	2.7	2.85	2.67	2.9	0.003	0.59	0.0	0.04	15.53	0.00	1.994	7.02	3.48	3.5	96.5	0.0	0.07	0.65	0.83	3.90	2.9	0.007	0.73	0.0	0.05	16.42	0.01	2.477	6.22	3.63	5.8	94.2	0.0	-0.39	0.33	0.64	0.83	4.30	12726	1659	15	0	0	0	0	logfile
✔	7YQD	34024	2024-12-29	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.55	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.003	0.60	0.0	0.04	16.64	0.00	2.390	6.45	3.02	0.7	99.3	0.0	4.46	0.66	0.77	0.84	1.18	10290	1330	7	0	0	0	0	logfile
✔	8DYT	27781	2024-12-31	2022-08-05	3.3	3.55	3.28	3.5	0.007	0.67	0.0	0.05	15.30	0.01	2.181	8.30	0.45	5.1	94.9	0.0	-0.40	0.80	0.89	4.29	3.5	0.003	0.55	0.0	0.04	15.89	0.00	2.535	6.41	3.32	4.2	95.8	0.0	0.15	1.19	0.82	0.89	4.30	14578	1920	18	0	0	0	0	logfile
✔	8DYV	27783	2024-12-27	2022-08-05	3.97	4.29	4.08	4.2	0.005	0.89	2.0	0.05	15.82	0.01	2.130	5.76	0.20	3.6	96.3	0.0	-0.06	0.72	0.70	0.70	4.2	0.003	0.59	0.0	0.04	16.42	0.00	2.312	9.44	1.73	4.1	95.9	0.0	0.24	0.52	0.72	0.69	0.38	45926	2854	3	0	4	0	22874	logfile
✔	8DYU	27782	2024-12-27	2022-08-05	4.0	4.36	4.20	4.3	0.005	0.87	2.0	0.05	14.19	0.01	2.167	4.21	0.23	3.1	96.8	0.0	-0.21	0.72	0.68	—	4.3	0.003	0.61	0.0	0.04	15.90	0.00	2.106	8.17	1.41	2.8	97.2	0.0	0.90	0.87	0.73	0.72	—	48178	3174	4	0	4	0	23568	logfile
✔	7YQ8	34022	2024-12-30	2022-08-05	3.9	4.11	3.68	3.3	0.004	0.65	0.0	0.04	17.08	0.00	2.038	13.21	0.00	3.7	96.3	0.0	0.76	0.86	0.80	1.12	3.3	0.003	0.59	0.0	0.04	18.37	0.00	2.005	9.03	1.48	3.4	96.6	0.0	0.82	1.30	0.85	0.79	0.50	13036	1460	10	56	4	0	0	logfile
✔	8AMW	15527	2024-12-31	2022-08-04	3.0	3.27	3.03	3.2	0.005	0.61	0.0	0.04	11.06	0.01	2.245	3.30	0.44	3.9	96.1	0.0	1.57	0.63	0.87	3.65	3.2	0.002	0.53	0.0	0.04	13.66	0.00	2.468	4.34	1.25	3.4	96.6	0.0	2.43	0.27	0.66	0.88	2.51	15792	2032	21	0	16	5	0	logfile
✔	7YPX	34017	2024-12-28	2022-08-04	3.12	4.18	3.16	3.7	0.004	0.57	0.0	0.04	10.61	0.00	2.092	12.71	0.00	3.7	96.3	0.0	-0.23	0.91	0.85	2.88	3.7	0.003	0.68	0.0	0.04	12.65	0.00	2.458	10.40	1.04	2.9	97.1	0.0	-0.35	1.13	0.92	0.86	2.27	8808	1236	6	0	0	0	0	logfile
✔	7YPo	34010	2024-12-29	2022-08-04	3.5	3.79	3.56	3.8	0.004	0.59	0.0	0.04	16.33	0.00	2.091	11.72	0.00	4.7	95.3	0.0	-1.80	0.56	0.78	2.30	3.8	0.003	0.59	0.0	0.04	18.67	0.00	2.483	8.88	2.02	3.3	96.7	0.0	-1.01	0.57	0.55	0.77	2.35	11324	1308	5	28	0	0	0	logfile
✔	7YPQ	34011	2024-12-27	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.79	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	3.2	0.005	0.59	0.0	0.04	19.36	0.00	2.537	7.57	1.61	2.2	97.8	0.0	0.11	0.31	0.52	0.80	2.26	2915	327	2	11	0	0	0	logfile
✔	8AMX	15528	2024-12-31	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.003	0.56	0.0	0.04	15.17	0.00	2.625	3.26	0.50	3.2	96.4	0.3	2.78	0.24	0.69	0.89	2.98	15633	2024	16	0	0	57	0	logfile
✔	8AN1	15529	2024-12-27	2022-08-04	3.93	4.18	3.94	4.0	0.002	0.47	0.0	0.04	11.04	0.00	2.168	6.31	3.10	3.4	96.5	0.1	1.42	0.83	0.81	1.35	4.0	0.003	0.64	0.0	0.04	14.08	0.00	2.129	6.24	3.82	4.6	95.3	0.1	0.97	1.16	0.83	0.81	1.27	47790	6255	18	0	0	0	0	logfile
✔	8DY9	27778	2024-12-30	2022-08-03	3.12	3.48	3.21	3.4	0.003	0.52	1.0	0.04	17.51	0.00	2.007	5.95	0.00	4.5	95.5	0.0	0.42	0.76	0.78	2.45	3.4	0.004	0.53	1.0	0.04	18.21	0.00	2.184	2.99	0.48	5.1	94.9	0.0	0.39	0.21	0.77	0.80	2.28	63435	3777	16	144	5	0	31140	logfile

• ← previous
• Page 190 of 409
• next →