Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AQS	15588	2024-12-27	2022-08-13	2.92	3.24	3.03	3.2	0.003	0.54	0.0	0.04	14.74	0.00	2.227	4.10	0.00	2.9	96.8	0.3	0.71	0.62	0.81	2.20	3.2	0.003	0.58	0.0	0.04	15.56	0.00	2.307	3.16	1.44	3.3	96.4	0.3	0.79	1.08	0.61	0.80	1.83	6493	788	4	0	7	1	0	logfile
✔	8AQW	15592	2024-12-27	2022-08-13	3.3	3.63	3.42	3.6	0.002	0.59	0.0	0.04	15.58	0.00	2.177	5.96	0.15	6.1	93.6	0.3	-0.74	0.61	0.76	2.62	3.6	0.003	0.65	0.0	0.04	15.57	0.00	2.483	6.20	1.02	5.6	94.1	0.3	-0.83	0.39	0.64	0.79	2.18	6457	789	4	0	3	0	0	logfile
✔	7YSR	34081	2024-12-30	2022-08-12	4.3	4.43	4.10	4.3	0.003	0.59	0.0	0.04	14.91	0.00	2.142	14.24	0.00	4.0	96.0	0.0	0.51	0.60	0.82	—	4.3	0.003	0.61	0.0	0.04	14.85	0.00	2.345	9.48	0.00	3.0	97.0	0.0	0.70	1.58	0.60	0.83	—	13456	1696	8	0	4	0	0	logfile
✔	7YS6	34073	2024-12-28	2022-08-11	3.0	2.25	3.04	3.2	0.007	1.11	0.0	0.06	15.45	0.01	1.631	8.57	0.53	3.9	96.1	0.0	-2.80	0.75	0.73	1.64	3.2	0.003	0.65	0.0	0.04	16.68	0.00	2.492	8.79	3.80	2.9	97.1	0.0	0.33	1.24	0.77	0.77	2.35	8794	1129	6	0	1	0	0	logfile
✔	8E1M	27825	2024-12-27	2022-08-10	2.9	3.48	2.86	3.2	0.007	0.77	0.0	0.04	14.84	0.00	2.179	7.34	0.00	2.7	97.3	0.0	-0.83	0.69	0.86	4.21	3.3	0.003	0.64	0.0	0.04	15.37	0.00	2.389	7.34	1.11	1.7	98.3	0.0	2.11	0.58	0.63	0.83	3.14	5691	760	7	0	2	0	0	logfile
✔	7YRN	34063	2024-12-31	2022-08-10	2.99	3.42	3.10	3.2	0.002	0.48	0.0	0.04	10.42	0.00	2.284	9.91	4.02	5.8	93.7	0.5	-0.60	0.74	0.66	2.01	3.2	0.003	0.65	0.0	0.05	14.01	0.00	2.445	10.22	3.17	6.5	93.2	0.3	-1.14	1.33	0.77	0.73	2.21	16080	1977	15	0	12	0	0	logfile
✔	7YR6	34047	2024-12-27	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.004	0.78	0.0	0.04	25.96	0.00	2.356	29.40	0.00	23.6	76.4	0.0	-5.37	0.78	0.82	0.80	—	4248	220	5	118	0	0	0	logfile
✔	8E14	27823	2024-12-30	2022-08-09	3.36	4.87	3.36	3.5	0.007	1.12	1.0	0.08	24.72	0.01	2.182	16.48	0.41	17.7	82.3	0.0	-2.84	0.92	0.86	0.70	3.5	0.003	0.72	0.0	0.04	24.60	0.00	2.505	11.69	4.34	16.5	83.5	0.0	-2.57	0.35	0.92	0.86	1.06	12442	1161	16	160	2	0	0	logfile
✔	7YRD	34053	2024-12-31	2022-08-09	3.2	3.20	3.81	3.1	0.007	0.76	2.0	0.04	26.76	0.01	2.057	13.40	0.70	5.5	94.5	0.0	-0.70	0.66	0.80	1.98	3.1	0.004	0.61	0.0	0.04	26.49	0.00	2.503	10.15	1.51	4.2	95.8	0.0	0.82	1.09	0.64	0.80	1.59	14276	1051	12	292	2	0	0	logfile
✔	7YRG	34055	2024-12-31	2022-08-09	4.2	4.22	2.00	4.1	0.007	0.82	4.0	0.05	25.62	0.01	1.035	27.90	1.11	6.4	93.6	0.0	-1.23	0.67	0.63	—	4.2	0.006	0.81	0.0	0.04	25.55	0.00	0.771	18.21	0.28	6.6	93.4	0.0	-1.11	1.43	0.76	0.78	—	16377	1313	14	292	4	0	0	logfile
✔	7YR7	34048	2024-12-27	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	25.59	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.006	0.95	0.0	0.05	25.50	0.01	2.085	21.95	4.01	22.0	78.0	0.0	-3.37	1.70	0.67	0.66	-0.09	5102	330	7	118	0	0	0	logfile
✔	8AP1	15556	2024-12-29	2022-08-09	3.47	3.19	3.47	3.4	0.005	0.76	0.0	0.05	18.36	0.00	2.023	5.94	0.27	3.9	96.1	0.0	0.17	0.66	0.82	3.13	3.4	0.003	0.56	0.0	0.04	19.53	0.00	2.008	4.84	2.37	3.8	96.2	0.0	0.73	0.33	0.66	0.84	2.59	11221	1257	6	54	3	0	0	logfile
✔	8AP8	15561	2024-12-30	2022-08-09	3.7	3.98	3.47	3.8	0.002	0.39	0.0	0.04	8.11	0.00	2.139	2.40	0.31	1.6	98.4	0.0	2.44	0.72	0.82	1.61	3.8	0.004	0.52	0.0	0.04	13.68	0.00	2.114	4.39	2.18	3.6	96.4	0.0	2.07	1.16	0.74	0.84	1.56	12083	767	5	0	0	0	6098	logfile
✔	8DZQ	27805	2024-12-28	2022-08-08	2.82	2.18	2.79	2.1	0.004	0.75	0.0	0.05	13.13	0.00	2.244	6.40	0.23	6.2	93.8	0.0	-0.46	0.74	0.71	3.49	1.8	0.002	0.60	0.0	0.04	15.47	0.00	2.308	7.13	1.83	5.4	94.6	0.0	0.25	0.32	0.75	0.74	3.03	8342	1100	6	0	1	0	0	logfile
✔	8AoV	15553	2024-12-26	2022-08-08	2.48	2.62	2.54	2.6	0.003	0.57	0.0	0.04	16.27	0.00	2.044	8.08	2.01	3.0	97.0	0.0	-0.35	0.74	0.84	3.85	2.6	0.007	0.70	0.0	0.05	16.52	0.01	1.895	7.49	2.73	3.8	96.2	0.0	-0.06	0.21	0.74	0.83	4.25	42900	5352	36	0	24	228	0	logfile
✔	7YR5	34046	2024-12-27	2022-08-08	3.63	3.97	3.62	3.9	0.005	0.81	0.0	0.05	13.92	0.00	2.250	8.97	0.00	5.5	94.5	0.0	-0.05	0.57	0.78	1.28	3.9	0.004	0.71	0.0	0.04	16.54	0.00	2.527	11.55	4.36	6.0	94.0	0.0	0.12	0.50	0.58	0.80	0.84	4828	622	2	0	0	0	0	logfile
✔	7YR0	34041	2024-12-27	2022-08-08	3.98	4.16	3.84	4.1	0.003	0.68	0.0	0.05	15.97	0.00	2.164	11.64	0.00	8.3	91.4	0.2	-1.76	0.64	0.77	2.12	4.1	0.003	0.70	0.0	0.05	15.32	0.00	2.507	8.77	3.93	7.6	92.2	0.2	-1.81	0.48	0.64	0.77	1.70	3383	427	4	0	4	0	0	logfile
✔	8DZS	27807	2024-12-28	2022-08-08	2.65	2.07	2.73	2.0	0.004	0.76	0.0	0.05	14.48	0.01	2.253	5.63	0.12	4.2	95.8	0.0	-1.00	0.77	0.75	3.73	1.9	0.003	0.58	0.0	0.04	15.61	0.00	2.559	6.50	2.01	4.0	96.0	0.0	0.00	1.29	0.79	0.79	3.11	8245	1100	6	0	1	0	0	logfile
✔	8DZW	27808	2024-12-27	2022-08-08	2.46	2.76	2.62	2.8	0.007	1.16	9.0	0.06	14.16	0.01	2.112	3.13	1.29	5.5	94.4	0.1	-0.58	0.71	0.81	3.50	2.7	0.005	0.80	0.0	0.05	15.66	0.00	2.132	2.06	1.25	5.1	94.9	0.0	-0.41	1.65	0.70	0.83	3.18	40250	2655	9	0	0	0	20048	logfile
✔	8DZZ	27810	2024-12-28	2022-08-08	4.1	4.63	4.25	4.1	0.004	0.74	5.0	0.05	12.49	0.00	2.145	3.15	0.25	1.6	98.4	0.0	1.15	0.88	0.81	—	4.1	0.002	0.54	0.0	0.04	12.51	0.00	2.445	5.88	0.00	2.0	98.0	0.0	1.98	0.48	0.89	0.85	—	49596	6110	8	0	8	0	0	logfile

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