Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E3Z	27874	2024-12-28	2022-08-17	2.7	3.04	2.73	3.0	0.003	0.59	0.0	0.04	12.80	0.00	2.219	7.18	0.11	2.2	97.8	0.0	0.87	0.68	0.77	2.49	2.9	0.003	0.57	0.0	0.04	16.40	0.00	2.462	5.70	1.92	2.6	97.4	0.0	1.14	0.58	0.73	0.84	2.87	8898	1132	8	0	0	5	0	logfile
✔	7YUV	34112	2024-12-31	2022-08-17	3.8	4.01	3.85	3.9	0.003	0.67	0.0	0.04	13.83	0.00	2.141	15.66	0.06	6.3	93.7	0.0	-1.33	0.74	0.66	0.61	3.9	0.003	0.74	0.0	0.05	15.93	0.00	2.428	15.27	2.48	6.7	93.3	0.0	-1.26	0.47	0.76	0.70	0.55	16657	2128	7	0	3	0	0	logfile
✔	7YUH	34107	2024-12-30	2022-08-17	3.7	3.99	3.78	3.8	0.010	1.18	0.0	0.07	10.78	0.01	2.253	6.61	0.15	10.9	88.9	0.1	-4.68	0.80	0.77	1.57	3.8	0.003	0.73	0.0	0.04	15.11	0.01	2.498	10.12	2.11	6.7	93.3	0.0	-1.11	1.26	0.80	0.77	0.85	12432	1596	3	0	0	0	0	logfile
✔	8E3i	27866	2024-12-30	2022-08-17	2.53	2.76	2.58	2.8	0.004	0.62	0.0	0.04	13.35	0.00	2.215	8.98	0.07	5.3	94.6	0.1	-0.36	0.73	0.88	4.95	2.8	0.003	0.61	0.0	0.04	15.85	0.00	2.445	6.70	1.10	5.0	94.9	0.1	-0.54	0.36	0.74	0.89	4.70	13431	1671	5	7	3	0	0	logfile
✔	8E2U	27846	2024-12-30	2022-08-16	3.48	3.78	3.51	3.9	0.006	0.97	0.0	0.05	14.01	0.01	2.162	4.01	0.94	8.2	91.4	0.3	-2.08	0.71	0.78	2.50	3.9	0.003	0.60	0.0	0.04	15.01	0.00	2.397	3.02	1.21	7.9	92.0	0.1	-1.73	0.46	0.70	0.79	2.40	13228	880	3	0	0	0	6581	logfile
✔	7YTW	34094	2024-12-28	2022-08-16	3.2	3.60	3.23	3.6	0.009	1.11	0.0	0.07	13.30	0.01	2.029	8.32	0.00	5.0	95.0	0.0	-3.06	0.57	0.80	2.90	3.6	0.004	0.69	0.0	0.05	14.81	0.01	2.300	11.83	1.66	4.3	95.7	0.0	0.33	0.28	0.59	0.82	1.21	7744	1014	6	0	6	2	0	logfile
✔	8ARi	15603	2024-12-30	2022-08-16	3.0	3.68	3.06	3.4	0.003	0.50	0.0	0.04	9.10	0.00	2.254	2.40	0.38	4.2	95.7	0.1	-0.94	0.89	0.88	4.79	3.4	0.003	0.49	0.0	0.04	11.07	0.00	2.599	1.25	0.54	3.8	96.2	0.0	0.31	0.95	0.87	0.91	3.58	63756	8160	58	0	24	0	0	logfile
✔	7YTY	34095	2024-12-28	2022-08-16	3.5	3.88	3.47	3.9	0.009	1.18	0.0	0.06	13.29	0.01	2.027	7.48	0.00	4.0	96.0	0.0	-1.66	0.56	0.77	2.02	3.9	0.004	0.66	0.0	0.04	15.59	0.00	2.549	11.58	3.86	4.9	95.1	0.0	0.70	0.49	0.61	0.80	1.36	7608	1002	2	0	0	0	0	logfile
✔	8E2G	27835	2024-12-28	2022-08-15	2.99	3.17	3.03	3.1	0.003	0.60	0.0	0.04	15.68	0.00	1.928	12.10	2.42	6.4	93.6	0.0	-1.77	0.46	0.74	2.37	3.1	0.003	0.61	0.0	0.04	15.93	0.01	2.328	10.37	1.54	8.5	91.5	0.0	-1.65	1.01	0.47	0.74	2.26	8110	523	1	0	0	0	4078	logfile
✔	8E2J	27838	2024-12-27	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.47	0.0	0.02	17.86	0.00	2.280	7.99	2.36	1.2	98.8	0.0	4.33	1.68	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	8E2H	27836	2024-12-29	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.003	0.57	0.0	0.03	15.76	0.00	2.334	5.11	1.91	0.5	99.5	0.0	2.91	0.94	0.65	0.83	4.18	10412	656	2	0	0	40	5280	logfile
✔	7YTJ	34090	2024-12-30	2022-08-15	3.0	3.34	3.12	3.3	0.004	0.81	0.0	0.33	18.80	0.01	2.203	8.45	1.41	3.3	96.7	0.0	1.69	0.65	0.79	2.51	3.3	0.003	0.59	0.0	0.04	16.55	0.00	2.273	7.70	2.11	3.6	96.4	0.0	2.36	0.37	0.65	0.79	1.74	13137	1574	7	0	7	0	0	logfile
✔	7YTP	34091	2024-12-30	2022-08-15	2.77	2.56	2.75	2.8	0.003	0.60	0.0	0.05	13.08	0.01	2.179	8.19	0.15	4.8	95.0	0.3	-1.49	0.59	0.73	2.44	2.7	0.003	0.65	0.0	0.05	15.85	0.00	2.371	6.02	1.67	6.1	93.6	0.3	-1.34	0.66	0.63	0.82	3.54	12178	1462	10	0	24	0	0	logfile
✔	8E2D	27832	2024-12-30	2022-08-15	2.07	2.27	2.16	2.3	0.003	0.56	0.0	0.04	15.75	0.00	1.968	6.49	0.85	2.0	98.0	0.0	1.44	0.63	0.82	4.02	2.3	0.003	0.55	0.0	0.04	15.83	0.00	2.333	5.24	0.77	2.6	97.4	0.0	1.76	0.32	0.64	0.83	4.00	62460	3936	2	0	0	0	31562	logfile
✔	8E2F	27834	2024-12-30	2022-08-15	2.47	2.75	2.45	2.7	0.003	0.62	0.0	0.04	16.35	0.00	2.040	6.66	1.58	3.0	97.0	0.0	1.05	0.58	0.82	4.21	2.7	0.004	0.58	0.0	0.04	16.76	0.00	2.131	5.36	2.16	2.8	97.2	0.0	1.42	0.31	0.61	0.83	3.79	12305	771	1	0	0	0	6207	logfile
✔	8E27	27827	2024-12-27	2022-08-14	3.4	3.73	3.56	3.7	0.010	1.10	0.0	0.07	14.24	0.01	2.297	2.69	0.34	1.2	98.8	0.0	-0.92	0.71	0.84	2.46	3.7	0.003	0.58	0.0	0.04	16.23	0.00	2.583	3.71	1.69	2.5	97.5	0.0	0.45	0.53	0.69	0.84	2.44	5371	676	1	0	0	0	0	logfile
✔	8E29	27829	2024-12-27	2022-08-14	3.1	3.72	3.29	3.6	0.012	1.14	0.0	0.07	17.73	0.01	2.305	6.53	0.66	1.5	98.5	0.0	-1.55	0.70	0.79	3.22	3.6	0.002	0.55	0.0	0.04	18.22	0.00	2.429	4.88	1.97	1.9	98.1	0.0	0.56	0.39	0.61	0.73	3.03	6197	692	2	33	0	0	0	logfile
✔	8AQV	15591	2024-12-27	2022-08-13	2.96	3.40	3.09	3.4	0.003	0.71	0.0	0.04	12.96	0.00	2.164	4.53	0.00	4.8	94.5	0.6	-1.32	0.64	0.80	2.89	3.4	0.002	0.57	0.0	0.04	15.88	0.00	2.515	4.93	2.62	5.2	94.4	0.4	-0.04	0.53	0.61	0.79	2.11	6447	789	4	0	3	0	0	logfile
✔	8AQT	15589	2024-12-27	2022-08-13	4.4	4.64	4.72	4.5	0.003	0.70	1.0	0.04	14.46	0.01	2.165	9.80	0.45	5.4	93.8	0.8	-1.80	0.59	0.59	—	4.5	0.003	0.73	0.0	0.05	14.30	0.00	2.438	8.75	0.15	5.4	94.4	0.1	-1.41	1.65	0.62	0.62	—	6321	777	4	0	3	0	0	logfile
✔	8AQW	15592	2024-12-27	2022-08-13	3.3	3.63	3.42	3.6	0.002	0.59	0.0	0.04	15.58	0.00	2.177	5.96	0.15	6.1	93.6	0.3	-0.74	0.61	0.76	2.62	3.6	0.003	0.65	0.0	0.04	15.57	0.00	2.483	6.20	1.02	5.6	94.1	0.3	-0.83	0.39	0.64	0.79	2.18	6457	789	4	0	3	0	0	logfile

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