Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YVM	34132	2024-12-27	2022-08-19	3.5	3.56	3.31	3.6	0.009	1.38	6.0	0.09	13.48	0.01	2.166	28.59	1.57	8.9	90.6	0.5	-4.19	0.55	0.72	1.76	3.6	0.005	0.89	0.0	0.05	15.58	0.01	2.494	8.76	5.66	7.0	93.0	0.0	-1.79	1.18	0.57	0.75	2.11	3126	420	3	0	0	0	0	logfile
✔	7YVB	34122	2024-12-30	2022-08-19	2.9	2.91	2.82	3.1	0.007	0.78	0.0	0.05	14.82	0.00	2.215	13.18	1.17	4.7	95.3	0.0	-0.41	0.72	0.84	3.06	3.1	0.003	0.68	0.0	0.04	15.86	0.00	2.493	8.08	1.25	3.6	96.4	0.0	0.33	0.39	0.68	0.83	2.70	11889	1425	21	0	30	0	0	logfile
✔	7YVC	34123	2024-12-30	2022-08-19	3.0	3.32	2.97	3.3	0.007	0.82	0.0	0.07	14.94	0.00	2.017	7.45	0.48	5.2	94.8	0.0	-0.81	0.78	0.86	2.86	3.3	0.003	0.62	0.0	0.05	15.81	0.00	2.572	5.29	1.19	3.2	96.8	0.0	0.54	0.38	0.74	0.83	2.72	11662	1401	18	0	31	0	0	logfile
✔	8E55	27903	2024-12-29	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.62	0.0	0.03	16.54	0.00	2.356	9.84	1.34	1.7	98.3	0.0	4.21	1.46	0.69	0.71	-0.11	12176	780	4	0	0	0	6104	logfile
✔	7YVL	34131	2024-12-27	2022-08-19	3.3	3.44	3.21	3.4	0.011	1.16	5.0	0.07	12.98	0.01	2.155	18.66	1.42	9.0	90.6	0.5	-4.93	0.57	0.77	1.24	3.4	0.004	0.81	0.0	0.05	15.32	0.00	2.470	8.38	6.55	8.7	91.0	0.2	-2.03	2.16	0.57	0.82	2.09	3224	419	3	0	0	0	0	logfile
✔	8ASG	15615	2024-12-30	2022-08-19	3.2	3.40	3.28	3.3	0.003	0.77	0.0	0.05	15.82	0.01	2.114	6.64	0.29	4.8	95.2	0.0	-1.13	0.73	0.82	2.47	3.3	0.003	0.66	0.0	0.04	16.85	0.00	1.959	8.31	0.96	5.5	94.5	0.0	-0.12	0.39	0.72	0.84	2.26	12687	1544	5	17	1	0	0	logfile
✔	8ASi	15616	2024-12-31	2022-08-19	2.9	2.71	2.83	2.9	0.009	1.27	0.0	0.05	20.47	0.01	1.929	5.10	0.00	2.5	97.4	0.1	-0.83	0.54	0.77	4.04	2.9	0.003	0.68	0.0	0.04	18.50	0.00	2.484	5.38	1.74	1.9	98.1	0.0	1.26	0.54	0.59	0.82	3.01	14720	1789	14	0	21	0	0	logfile
✔	8ASJ	15617	2024-12-31	2022-08-19	3.75	2.75	3.13	3.1	0.008	1.09	0.0	0.05	20.54	0.01	2.165	3.87	0.21	3.4	96.5	0.1	-0.91	0.48	0.71	3.63	3.0	0.003	0.85	1.0	0.04	18.28	0.00	2.385	6.02	1.74	2.8	97.2	0.1	1.20	0.55	0.61	0.80	2.29	14720	1789	14	0	21	0	0	logfile
✔	8AS6	15607	2024-12-30	2022-08-18	3.4	2.91	3.40	3.2	0.004	0.70	0.0	0.04	15.52	0.01	2.232	4.32	0.00	8.1	91.9	0.0	-1.67	0.68	0.83	2.08	3.1	0.004	0.63	0.0	0.04	16.65	0.00	2.495	6.21	0.80	8.2	91.8	0.0	-0.95	0.34	0.69	0.86	1.97	12784	1566	2	14	0	0	0	logfile
✔	7YV8	34120	2024-12-28	2022-08-18	2.94	2.33	2.97	2.1	0.005	0.65	0.0	0.04	15.36	0.00	2.006	3.85	0.15	6.1	93.9	0.0	-0.89	0.78	0.82	4.02	2.1	0.003	0.65	0.0	0.04	16.02	0.00	2.032	4.87	1.16	5.7	94.3	0.0	0.45	0.95	0.80	0.84	3.03	6513	793	4	0	7	0	0	logfile
✔	7YUY	34115	2024-12-30	2022-08-18	3.5	3.66	3.45	3.6	0.006	0.87	0.0	0.05	15.06	0.01	2.081	7.73	0.32	9.7	90.1	0.2	-2.51	0.69	0.85	3.04	3.6	0.003	0.63	0.0	0.04	15.91	0.00	2.556	3.95	1.81	8.0	91.8	0.2	-0.44	1.01	0.69	0.85	2.01	12391	1503	4	0	31	0	0	logfile
✔	8E4C	27888	2024-12-27	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.84	2.0	0.07	16.28	0.01	2.251	7.49	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.004	0.81	0.0	0.05	17.26	0.01	2.148	13.71	6.21	5.5	94.5	0.0	-0.53	1.25	0.48	0.48	—	6398	805	6	0	5	0	0	logfile
✔	8E4P	27895	2024-12-28	2022-08-18	3.59	4.02	3.50	3.9	0.004	0.75	0.0	0.05	13.21	0.00	2.242	7.79	0.00	3.0	97.0	0.0	2.88	0.65	0.74	1.40	3.8	0.003	0.50	0.0	0.03	13.70	0.00	2.193	6.15	1.19	3.6	96.4	0.0	2.80	0.45	0.66	0.76	1.42	51336	3596	8	0	12	0	24392	logfile
✔	8E3Y	27873	2024-12-28	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.58	0.0	0.04	15.75	0.00	2.478	5.55	0.95	1.7	98.3	0.0	1.74	0.79	0.74	0.88	4.28	8966	1139	8	0	0	14	0	logfile
✔	7YUM	34108	2024-12-31	2022-08-17	3.8	4.12	3.93	3.9	0.010	1.26	0.0	0.07	11.17	0.01	2.209	8.96	0.34	12.3	87.6	0.1	-4.61	0.81	0.73	1.03	3.9	0.003	0.78	0.0	0.04	14.97	0.00	2.464	12.13	2.20	7.3	92.7	0.0	-1.06	1.47	0.81	0.71	0.46	16576	2128	4	0	0	0	0	logfile
✔	7YUV	34112	2024-12-31	2022-08-17	3.8	4.01	3.85	3.9	0.003	0.67	0.0	0.04	13.83	0.00	2.141	15.66	0.06	6.3	93.7	0.0	-1.33	0.74	0.66	0.61	3.9	0.003	0.74	0.0	0.05	15.93	0.00	2.428	15.27	2.48	6.7	93.3	0.0	-1.26	0.47	0.76	0.70	0.55	16657	2128	7	0	3	0	0	logfile
✔	7YUF	34105	2024-12-28	2022-08-17	3.29	3.54	3.31	3.7	0.006	0.80	0.0	0.05	12.37	0.01	2.232	1.74	0.00	3.8	96.2	0.0	-0.26	0.57	0.73	2.51	3.6	0.003	0.61	0.0	0.04	14.84	0.00	2.439	4.79	2.64	3.6	96.4	0.0	1.18	0.61	0.61	0.78	1.08	8415	1105	5	0	0	0	0	logfile
✔	8E40	27875	2024-12-29	2022-08-17	3.57	4.33	3.57	3.7	0.005	0.93	0.0	0.05	19.34	0.01	2.225	18.73	2.12	5.9	93.9	0.2	-2.84	0.75	0.62	1.01	3.8	0.003	0.68	0.0	0.04	19.30	0.00	2.000	14.03	3.54	4.3	95.7	0.0	-0.65	1.79	0.87	0.76	0.97	6297	636	6	47	2	0	0	logfile
✔	8E3S	27871	2024-12-27	2022-08-17	3.1	4.11	3.27	3.9	0.003	0.59	0.0	0.04	13.23	0.00	2.185	10.30	0.00	3.6	96.4	0.0	0.13	0.79	0.75	2.95	3.9	0.003	0.61	0.0	0.04	15.10	0.00	2.599	6.82	1.35	3.0	97.0	0.0	0.02	1.00	0.78	0.75	2.49	4072	503	2	0	1	0	0	logfile
✔	8E3X	27872	2024-12-28	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.004	0.58	0.0	0.04	15.30	0.00	2.444	4.53	0.32	2.3	97.7	0.0	1.50	0.96	0.75	0.89	3.64	8979	1140	8	0	0	11	0	logfile

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