Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ATo	15654	2024-12-27	2022-08-23	3.0	3.29	3.27	3.3	0.003	0.55	0.0	0.04	13.63	0.00	2.120	9.40	0.09	2.9	97.1	0.0	0.96	0.61	0.78	1.82	3.2	0.005	0.77	0.0	0.04	15.93	0.00	1.959	10.77	1.68	4.1	95.9	0.0	0.48	0.96	0.65	0.83	1.64	46909	6063	4	0	0	0	0	logfile
✔	8GN5	34155	2024-12-30	2022-08-23	4.02	4.40	—	4.4	0.012	1.81	0.0	0.10	13.40	0.01	2.215	1.08	0.00	4.4	95.6	0.0	-1.29	0.33	0.81	—	4.4	0.003	0.70	0.0	0.04	13.88	0.00	2.526	5.28	0.08	3.6	96.4	0.0	-0.48	0.73	0.34	0.81	—	12096	1584	4	0	0	0	0	logfile
✔	8GN8	34157	2024-12-28	2022-08-23	3.5	3.73	3.54	3.8	0.003	0.66	0.0	0.04	16.61	0.01	2.271	6.07	0.34	4.5	95.5	0.0	0.26	0.54	0.80	1.78	3.8	0.004	0.67	0.0	0.04	17.26	0.01	2.479	3.84	4.83	5.8	94.2	0.0	1.13	0.42	0.55	0.81	2.15	7920	1010	5	0	0	0	0	logfile
✔	8GNB	34159	2024-12-31	2022-08-23	3.9	5.27	4.76	5.1	0.004	0.94	0.0	0.05	12.92	0.01	2.031	14.24	0.00	5.1	94.9	0.0	-0.65	0.53	0.62	0.52	5.1	0.003	1.03	0.0	0.05	16.72	0.01	2.503	15.43	3.76	5.8	94.2	0.0	-0.65	3.16	0.52	0.68	0.37	15770	2010	10	0	0	0	0	logfile
✔	8ATF	15647	2024-12-31	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	25.04	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.69	0.00	2.487	5.87	2.48	1.6	98.4	0.0	2.54	2.23	0.78	0.84	1.51	15719	1219	13	286	1	0	0	logfile
✔	8E76	27936	2024-12-31	2022-08-23	2.51	3.73	2.50	3.1	0.007	0.72	0.0	0.05	14.22	0.00	2.155	9.65	0.00	6.2	93.8	0.0	-2.28	0.76	0.68	1.90	3.2	0.003	0.72	0.0	0.04	15.84	0.00	2.418	8.65	0.64	6.1	93.9	0.0	-0.12	2.47	0.86	0.86	3.08	15928	2024	4	0	0	0	0	logfile
✔	8E6V	27927	2024-12-27	2022-08-23	3.3	3.56	3.33	3.5	0.004	0.90	0.0	0.05	16.78	0.01	2.240	11.95	0.00	9.8	89.2	1.0	-2.50	0.74	0.81	2.97	3.5	0.003	0.75	0.0	0.04	16.22	0.01	2.480	8.68	2.35	10.7	88.4	0.9	-1.72	0.40	0.74	0.83	2.43	5476	707	2	0	3	0	0	logfile
✔	8ATG	15649	2024-12-30	2022-08-23	2.9	3.96	3.12	3.7	0.007	0.71	0.0	0.04	18.85	0.00	2.256	13.02	0.00	7.4	92.6	0.0	-1.00	0.72	0.59	2.46	3.7	0.005	0.74	0.0	0.04	18.26	0.00	2.449	7.92	2.06	6.2	93.6	0.2	0.02	0.76	0.81	0.86	2.46	12990	1555	10	0	25	0	0	logfile
✔	8GNA	34158	2024-12-29	2022-08-23	2.8	3.23	2.81	3.2	0.003	0.58	0.0	0.05	17.06	0.00	2.125	13.00	0.00	6.8	93.2	0.0	-0.88	0.70	0.77	3.38	3.2	0.004	0.64	0.0	0.05	18.76	0.00	2.525	13.05	2.92	7.2	92.8	0.0	-1.09	0.37	0.68	0.78	3.41	10257	1188	4	49	4	0	0	logfile
✔	8E7D	26587	2024-12-27	2022-08-23	3.31	3.63	2.84	3.8	0.005	0.70	0.0	0.06	18.19	0.01	2.117	21.89	0.26	8.1	91.9	0.0	-4.77	0.53	0.80	3.16	3.9	0.007	0.89	0.0	0.05	17.21	0.00	2.514	17.20	2.60	9.5	90.5	0.0	-3.49	2.46	0.46	0.77	3.35	3525	450	5	0	0	0	0	logfile
✔	8GMU	34154	2024-12-27	2022-08-22	2.78	2.51	2.71	2.7	0.003	0.55	0.0	0.04	19.47	0.00	1.941	8.36	1.73	1.8	98.0	0.3	1.01	0.46	0.82	2.96	2.8	0.006	0.65	0.0	0.05	19.57	0.00	1.869	7.40	2.83	2.3	97.6	0.1	0.70	1.22	0.47	0.84	3.02	6214	797	6	6	4	0	0	logfile
✔	8GMS	34152	2024-12-28	2022-08-22	3.31	2.97	3.23	3.3	0.004	0.62	0.0	0.04	18.79	0.00	2.012	9.47	0.55	2.6	97.4	0.0	-0.05	0.43	0.80	1.85	3.2	0.004	0.60	0.0	0.05	19.41	0.00	1.975	7.70	4.68	4.0	96.0	0.0	-0.17	0.39	0.43	0.81	1.80	7022	902	7	6	4	0	0	logfile
✔	8E5G	27912	2024-12-28	2022-08-22	3.9	4.43	4.33	4.2	0.006	1.05	10.0	0.10	17.24	0.00	1.918	47.42	0.00	9.6	89.9	0.5	-2.33	0.62	0.75	0.01	4.2	0.004	0.96	0.0	0.04	18.74	0.00	1.546	11.99	3.10	7.7	91.5	0.8	-2.83	0.79	0.63	0.75	0.51	9065	1100	10	0	20	0	0	logfile
✔	8E5T	27919	2024-12-29	2022-08-22	4.0	4.14	3.98	3.7	0.003	0.68	0.0	0.06	21.12	0.00	1.971	4.00	0.00	3.7	96.2	0.1	-0.03	0.73	0.63	—	3.8	0.003	0.64	0.0	0.04	21.72	0.00	1.938	10.68	2.44	5.0	95.0	0.1	0.52	1.53	0.71	0.67	—	55125	5158	32	968	34	0	0	logfile
✔	8AT6	15635	2024-12-30	2022-08-22	3.7	3.84	3.67	3.7	0.003	0.64	0.0	0.04	16.25	0.00	2.222	9.66	0.00	5.9	93.8	0.3	0.49	0.89	0.85	1.40	3.7	0.005	0.64	0.0	0.04	16.88	0.00	2.489	7.30	2.60	6.6	93.2	0.2	0.60	0.30	0.89	0.85	1.30	12583	1580	6	0	0	0	0	logfile
✔	8E5F	27911	2024-12-29	2022-08-22	3.8	4.11	3.84	4.0	0.017	1.17	0.0	0.06	16.51	0.01	2.028	22.93	0.00	12.7	87.3	0.0	-2.96	0.71	0.84	3.52	4.1	0.007	0.95	1.0	0.05	16.89	0.00	2.142	9.69	3.74	16.4	83.6	0.0	-3.42	0.45	0.72	0.86	3.37	11890	1465	10	0	20	0	0	logfile
✔	8GMT	34153	2024-12-27	2022-08-22	3.31	2.91	3.22	3.2	0.003	0.52	0.0	0.04	18.12	0.00	1.995	6.94	0.32	1.8	98.2	0.0	1.01	0.43	0.80	1.29	3.2	0.003	0.54	0.0	0.04	18.48	0.00	2.001	6.46	1.89	1.0	99.0	0.0	0.54	0.38	0.41	0.81	1.46	6172	796	7	6	4	0	0	logfile
✔	7YVF	34125	2024-12-27	2022-08-19	3.4	3.55	3.27	3.4	0.006	0.76	0.0	0.05	12.39	0.01	2.217	8.73	0.56	7.6	91.9	0.5	-3.93	0.59	0.86	3.79	3.4	0.003	0.71	0.0	0.04	14.54	0.00	2.556	5.77	3.39	7.2	92.8	0.0	-1.69	1.27	0.60	0.88	2.98	3283	425	3	0	0	0	0	logfile
✔	7YVL	34131	2024-12-27	2022-08-19	3.3	3.44	3.21	3.4	0.011	1.16	5.0	0.07	12.98	0.01	2.155	18.66	1.42	9.0	90.6	0.5	-4.93	0.57	0.77	1.24	3.4	0.004	0.81	0.0	0.05	15.32	0.00	2.470	8.38	6.55	8.7	91.0	0.2	-2.03	2.16	0.57	0.82	2.09	3224	419	3	0	0	0	0	logfile
✔	7YVJ	34129	2024-12-27	2022-08-19	3.6	3.88	3.53	3.8	0.008	1.05	0.0	0.07	13.62	0.01	1.805	24.91	1.73	8.3	90.5	1.2	-4.50	0.63	0.81	1.73	3.8	0.003	0.80	0.0	0.04	14.98	0.00	2.472	10.88	5.76	5.0	94.8	0.2	-1.48	0.71	0.64	0.82	1.05	3267	428	3	0	0	0	0	logfile

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