Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DRN	27678	2024-12-27	2022-07-21	4.12	4.23	4.09	4.2	0.004	0.98	0.0	0.05	15.67	0.01	2.264	18.85	0.26	6.6	93.4	0.0	-2.70	0.54	0.68	—	4.1	0.004	0.80	0.0	0.05	13.95	0.00	2.498	20.93	0.00	5.5	94.4	0.1	-2.36	1.87	0.59	0.73	—	6578	811	2	0	0	0	0	logfile
✔	7YJM	33874	2024-12-28	2022-07-20	3.2	3.29	3.09	3.2	0.006	1.05	0.0	0.06	19.54	0.00	1.946	17.47	17.31	9.4	89.4	1.2	-4.69	0.74	0.88	2.07	3.2	0.003	0.65	0.0	0.04	17.16	0.00	2.545	4.16	3.42	4.3	95.4	0.3	-0.83	0.41	0.73	0.89	2.16	8895	1120	7	0	2	0	0	logfile
✔	8DR8	27674	2024-12-31	2022-07-20	3.04	3.55	3.20	3.5	0.007	0.82	0.0	0.05	20.92	0.00	2.216	6.05	0.17	2.2	97.8	0.0	0.91	0.61	0.79	1.54	3.5	0.003	0.51	0.0	0.04	16.86	0.00	2.487	8.10	2.92	2.3	97.7	0.0	2.20	0.40	0.58	0.78	1.40	16270	1878	18	0	20	6	0	logfile
✔	8DR6	27672	2024-12-26	2022-07-20	2.39	3.20	2.47	3.0	0.002	0.52	0.0	0.04	17.90	0.00	1.996	3.30	0.95	1.3	98.7	0.0	2.01	0.85	0.85	3.82	3.0	0.003	0.54	0.0	0.04	18.11	0.00	1.782	2.34	0.48	1.9	98.1	0.0	1.85	1.01	0.77	0.86	3.75	43630	2608	20	63	9	12	21632	logfile
✔	8DRA	27675	2024-12-29	2022-07-20	3.98	4.17	3.98	4.0	0.003	0.77	0.0	0.05	15.74	0.01	2.257	11.58	0.35	5.4	94.6	0.0	-3.01	0.63	0.69	0.62	4.0	0.003	0.74	0.0	0.04	17.43	0.00	2.481	17.84	3.51	5.7	94.3	0.0	-2.69	2.05	0.67	0.75	0.88	9899	1218	3	0	0	0	0	logfile
✔	7YJ4	33871	2024-12-28	2022-07-19	3.19	3.39	3.21	3.4	0.004	0.67	0.0	0.05	14.73	0.01	2.175	9.63	1.55	5.5	94.4	0.1	-0.72	0.60	0.73	1.95	3.4	0.003	0.68	0.0	0.04	16.21	0.00	2.395	9.23	1.44	5.5	94.5	0.0	-0.40	0.69	0.62	0.78	2.18	8985	1154	7	0	0	0	0	logfile
✔	8DQL	27656	2024-12-27	2022-07-19	3.0	2.95	2.90	2.9	0.002	0.47	0.0	0.04	14.89	0.00	2.309	5.10	0.00	3.6	96.4	0.0	2.01	0.74	0.81	1.75	2.9	0.003	0.63	0.0	0.04	16.82	0.00	2.405	4.48	1.65	4.1	95.9	0.0	1.70	3.33	0.76	0.84	1.85	6402	771	3	0	0	0	0	logfile
✔	7YJ1	33868	2024-12-28	2022-07-19	3.1	3.27	3.03	3.2	0.006	0.84	0.0	0.05	18.00	0.00	1.486	11.68	9.53	7.4	91.9	0.7	-3.00	0.72	0.88	2.84	3.2	0.004	0.62	0.0	0.04	16.85	0.00	2.291	3.06	2.05	4.8	95.2	0.0	-0.02	0.36	0.72	0.88	2.30	9140	1154	6	0	1	0	0	logfile
✔	8AG3	15414	2024-12-27	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.004	0.63	0.0	0.04	17.31	0.01	2.509	9.47	3.25	8.2	91.8	0.0	-1.26	0.32	0.62	0.75	2.96	2632	322	2	0	0	0	0	logfile
✔	7YJ2	33869	2024-12-28	2022-07-19	2.9	3.04	2.91	3.0	0.010	1.03	0.0	0.07	17.03	0.01	2.119	9.08	8.32	7.1	92.3	0.6	-3.30	0.69	0.86	3.49	3.0	0.003	0.60	0.0	0.04	16.92	0.00	2.603	3.01	2.47	4.8	95.2	0.0	-0.34	0.42	0.68	0.87	2.45	9124	1154	6	0	1	0	0	logfile
✔	8AG5	15416	2024-12-30	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.004	0.76	1.0	0.05	17.87	0.00	2.325	6.86	2.81	3.4	96.6	0.0	0.53	0.25	0.76	0.78	2.98	13762	1703	4	0	0	0	0	logfile
✔	8AG4	15415	2024-12-29	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.6	0.003	0.53	0.0	0.04	15.63	0.00	2.552	4.31	0.95	3.6	96.4	0.0	0.78	0.31	0.81	0.83	3.74	11155	1384	4	0	0	0	0	logfile
✔	8AFX	15411	2024-12-27	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.03	0.00	2.612	10.54	0.00	6.8	93.2	0.0	-1.16	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	8AFH	15398	2024-12-30	2022-07-18	3.9	2.50	3.75	3.1	0.006	0.70	0.0	0.04	14.17	0.00	2.160	15.04	0.00	4.9	95.1	0.0	-1.29	0.61	0.62	1.09	2.1	0.003	0.61	0.0	0.04	17.37	0.00	2.444	8.97	4.01	4.0	96.0	0.0	1.57	1.60	0.63	0.66	0.73	13570	1760	20	0	0	0	0	logfile
✔	7YiU	33864	2024-12-29	2022-07-18	2.9	3.02	2.83	3.0	0.007	1.08	1.0	0.07	19.63	0.01	1.932	14.64	16.13	6.5	92.3	1.2	-4.83	0.69	0.87	2.38	3.0	0.003	0.63	0.0	0.04	17.63	0.00	2.564	3.70	3.25	4.8	95.2	0.0	-0.56	1.17	0.70	0.88	2.38	9285	1166	7	0	4	0	0	logfile
✔	8AFM	15402	2024-12-28	2022-07-18	4.8	3.13	4.72	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.003	0.81	0.0	0.04	15.70	0.01	2.330	13.56	0.00	5.9	94.1	0.0	-1.07	2.14	0.49	0.58	—	7842	1010	12	0	0	0	0	logfile
✔	8AFL	15401	2024-12-27	2022-07-18	4.4	3.03	4.24	2.2	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.68	0.25	8.4	91.6	0.0	-3.48	0.59	0.59	—	2.1	0.004	0.75	0.0	0.04	15.48	0.00	2.408	12.80	0.00	5.5	94.5	0.0	-1.26	0.76	0.59	0.58	—	3921	505	6	0	0	0	0	logfile
✔	7YiX	33865	2024-12-29	2022-07-18	2.96	3.52	3.10	3.4	0.003	0.51	0.0	0.04	13.44	0.00	2.001	3.35	0.00	3.6	96.4	0.0	-0.34	0.63	0.78	3.94	3.5	0.002	0.49	0.0	0.04	15.38	0.00	2.092	3.49	1.54	2.8	97.2	0.0	-0.16	1.14	0.64	0.80	3.53	11080	1416	10	0	20	0	0	logfile
✔	8DPS	27641	2024-12-29	2022-07-17	3.47	3.80	3.59	3.8	0.008	1.40	4.0	0.08	14.65	0.01	2.033	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.004	0.78	0.0	0.05	15.53	0.00	2.514	9.10	2.52	3.6	96.4	0.0	0.18	0.51	0.68	0.74	1.53	10610	1324	12	0	14	0	0	logfile
✔	7YiM	33861	2024-12-27	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.004	0.69	0.0	0.04	17.93	0.00	2.497	8.56	1.36	3.4	96.6	0.0	0.75	1.26	0.64	0.66	0.87	4657	592	1	0	0	0	0	logfile

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