Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DPT	27642	2024-12-31	2022-07-17	4.0	4.13	3.96	4.1	0.004	1.20	2.0	0.06	14.57	0.01	2.026	16.97	0.41	5.5	93.9	0.6	-0.83	0.64	0.68	—	4.1	0.003	0.76	0.0	0.04	15.22	0.01	2.526	9.93	1.91	4.3	95.7	0.0	0.32	0.62	0.70	0.76	—	13550	1714	12	0	14	0	0	logfile
✔	8DPS	27641	2024-12-29	2022-07-17	3.47	3.80	3.59	3.8	0.008	1.40	4.0	0.08	14.65	0.01	2.033	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.004	0.78	0.0	0.05	15.53	0.00	2.514	9.10	2.52	3.6	96.4	0.0	0.18	0.51	0.68	0.74	1.53	10610	1324	12	0	14	0	0	logfile
✔	8AFA	15393	2024-12-28	2022-07-16	3.16	3.52	3.20	3.5	0.003	0.48	0.0	0.04	14.99	0.00	2.223	6.23	0.53	1.8	98.2	0.0	0.26	0.63	0.83	2.67	3.5	0.003	0.50	0.0	0.04	15.27	0.00	2.537	8.54	2.01	1.6	98.4	0.0	2.70	0.34	0.58	0.81	2.11	9008	1208	6	0	0	0	0	logfile
✔	7Yi9	33854	2024-12-27	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.003	0.62	0.0	0.04	17.64	0.00	2.118	8.39	3.99	4.4	95.6	0.0	-0.40	1.96	0.64	0.78	3.03	5226	634	5	0	1	0	0	logfile
✔	8DPG	27634	2024-12-28	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.004	0.63	0.0	0.04	13.52	0.00	2.535	4.84	1.83	2.7	97.3	0.0	1.76	1.10	0.76	0.73	1.65	8162	1093	6	0	2	0	0	logfile
✔	8DPF	27633	2024-12-28	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.74	0.0	0.06	11.29	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.66	0.0	0.04	14.67	0.00	2.579	3.52	2.32	2.3	97.7	0.0	1.16	1.35	0.80	0.80	3.26	8160	1093	6	0	2	0	0	logfile
✔	8DPi	27636	2024-12-28	2022-07-15	3.4	2.28	3.42	2.1	0.003	0.52	0.0	0.06	11.00	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.65	0.0	0.04	14.29	0.00	2.543	5.98	3.54	3.2	96.8	0.0	1.24	0.60	0.75	0.73	2.45	8150	1093	6	0	2	0	0	logfile
✔	8DPH	27635	2024-12-28	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.56	0.0	0.04	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.60	0.0	0.04	13.94	0.00	2.538	4.64	1.95	2.9	97.1	0.0	1.65	1.05	0.78	0.77	2.22	8182	1093	6	0	3	0	0	logfile
✔	7Yi8	33853	2024-12-27	2022-07-15	2.7	2.97	2.76	2.9	0.003	0.61	0.0	0.04	14.73	0.00	2.179	9.92	0.00	4.0	96.0	0.0	-0.52	0.69	0.74	2.24	2.9	0.002	0.58	0.0	0.04	17.65	0.00	2.523	8.11	2.25	3.4	96.6	0.0	-0.62	0.96	0.68	0.77	1.94	5225	635	5	0	0	0	0	logfile
✔	7Yi3	33850	2024-12-29	2022-07-14	3.3	2.58	3.25	3.1	0.003	0.52	0.0	0.04	16.30	0.01	2.014	7.86	0.16	6.1	93.9	0.0	-0.30	0.73	0.77	2.60	2.5	0.003	0.53	0.0	0.04	16.97	0.00	2.041	6.71	2.67	6.3	93.7	0.0	0.38	0.27	0.73	0.78	2.07	11425	1392	7	0	5	0	0	logfile
✔	8AEX	15388	2024-12-27	2022-07-14	2.76	2.87	2.67	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.006	0.84	0.0	0.06	17.76	0.00	2.375	11.04	4.04	7.8	92.2	0.0	-2.46	0.37	0.49	0.87	4.79	4665	680	10	0	0	0	0	logfile
✔	8DoU	27623	2024-12-30	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.67	0.0	0.04	16.52	0.00	2.420	6.42	3.53	5.5	94.5	0.0	-0.14	0.55	0.73	0.80	1.53	10666	1300	6	0	2	0	0	logfile
✔	7Yi1	33848	2024-12-30	2022-07-14	2.8	2.41	2.78	2.6	0.003	0.57	0.0	0.03	26.98	0.00	2.155	7.30	0.37	1.9	98.1	0.0	0.11	0.81	0.84	2.94	2.6	0.004	0.58	0.0	0.04	27.65	0.00	2.149	6.23	2.35	1.8	98.2	0.0	1.74	0.23	0.81	0.86	2.72	13926	967	12	302	0	0	0	logfile
✔	7Yi0	33845	2024-12-30	2022-07-14	3.2	3.31	3.15	3.3	0.003	0.57	0.0	0.04	15.67	0.00	2.105	8.46	0.93	5.7	94.3	0.0	-0.27	0.62	0.62	1.43	3.3	0.003	0.61	0.0	0.04	17.35	0.00	2.086	7.38	2.46	5.9	94.1	0.0	0.81	1.01	0.68	0.74	1.76	13430	1638	9	0	7	0	0	logfile
✔	7YHo	33832	2024-12-27	2022-07-14	3.3	3.49	3.34	3.3	0.005	0.74	1.0	0.07	23.57	0.00	2.273	11.12	8.78	4.0	96.0	0.0	0.44	0.74	0.72	1.30	3.3	0.005	0.67	0.0	0.04	23.78	0.00	2.494	13.43	5.64	4.9	95.1	0.0	-0.10	0.55	0.75	0.75	1.48	3923	361	4	49	1	0	0	logfile
✔	7Yi2	33849	2024-12-30	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.003	0.57	0.0	0.04	19.07	0.00	2.052	7.40	2.90	7.3	92.7	0.0	-0.20	0.32	0.75	0.77	2.09	12140	1397	9	33	5	0	0	logfile
✔	7YHK	33831	2024-12-31	2022-07-13	3.14	3.38	3.17	3.4	0.007	0.99	0.0	0.06	14.13	0.01	2.022	5.30	0.76	5.0	94.8	0.2	-3.95	0.54	0.74	4.42	3.4	0.007	0.76	1.0	0.04	15.68	0.01	0.625	7.19	1.84	3.8	96.2	0.0	-1.37	0.42	0.70	0.88	4.09	14502	1812	15	0	18	0	0	logfile
✔	8Do3	27589	2024-12-27	2022-07-12	3.22	3.50	3.23	3.5	0.004	0.62	0.0	0.04	13.22	0.02	2.452	6.81	0.00	2.3	97.7	0.0	2.39	0.54	0.79	2.25	3.5	0.004	0.62	0.0	0.04	14.50	0.00	2.604	7.40	2.01	2.5	97.5	0.0	2.75	1.11	0.54	0.81	1.89	4185	534	4	0	1	0	0	logfile
✔	8DNV	27581	2024-12-27	2022-07-12	3.03	3.41	3.04	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.003	0.52	0.0	0.04	13.83	0.00	2.547	4.94	0.67	2.3	97.7	0.0	2.55	0.39	0.56	0.82	3.09	4157	535	3	0	0	0	0	logfile
✔	8Do2	27588	2024-12-27	2022-07-12	2.95	3.24	2.95	3.2	0.005	0.73	0.0	0.04	12.56	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.003	0.55	0.0	0.04	14.92	0.00	2.617	6.86	1.11	1.7	98.3	0.0	2.76	0.31	0.58	0.82	1.95	4226	541	4	0	1	0	0	logfile

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