Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DNV	27581	2024-12-27	2022-07-12	3.03	3.41	3.04	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.003	0.52	0.0	0.04	13.83	0.00	2.547	4.94	0.67	2.3	97.7	0.0	2.55	0.39	0.56	0.82	3.09	4157	535	3	0	0	0	0	logfile
✔	7YH6	33820	2024-12-27	2022-07-12	3.4	3.90	3.35	3.7	0.005	0.64	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	3.7	0.003	0.67	0.0	0.05	14.70	0.00	2.529	5.68	1.39	5.7	94.3	0.0	-0.63	0.74	0.66	0.86	3.16	3343	430	4	0	1	0	0	logfile
✔	8Do2	27588	2024-12-27	2022-07-12	2.95	3.24	2.95	3.2	0.005	0.73	0.0	0.04	12.56	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.003	0.55	0.0	0.04	14.92	0.00	2.617	6.86	1.11	1.7	98.3	0.0	2.76	0.31	0.58	0.82	1.95	4226	541	4	0	1	0	0	logfile
✔	7YGN	33817	2024-12-27	2022-07-11	3.0	3.26	3.08	3.3	0.006	0.85	0.0	0.05	15.42	0.01	1.892	3.34	0.00	2.7	97.3	0.0	0.11	0.69	0.77	2.97	3.3	0.003	0.56	0.0	0.04	16.82	0.00	1.977	5.05	1.64	3.1	96.9	0.0	0.99	0.57	0.65	0.80	2.62	6133	739	3	9	2	0	0	logfile
✔	8DNG	27566	2024-12-29	2022-07-11	3.0	3.19	3.01	3.2	0.004	0.61	0.0	0.05	15.29	0.00	2.029	11.14	2.15	3.2	96.8	0.0	0.46	0.53	0.67	2.03	3.2	0.002	0.57	0.0	0.05	16.39	0.00	2.539	6.37	2.23	2.1	97.9	0.0	0.06	0.51	0.65	0.77	1.87	10218	1308	6	0	12	0	0	logfile
✔	8ADU	15370	2024-12-27	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.3	0.005	0.78	0.0	0.05	17.21	0.00	2.526	14.33	6.09	12.2	87.8	0.0	-4.26	1.13	0.50	0.81	3.01	3460	495	5	0	0	0	0	logfile
✔	8DNS	27579	2024-12-29	2022-07-11	3.22	3.05	3.26	3.1	0.006	1.46	0.0	0.09	11.07	0.01	2.425	5.60	3.33	2.4	97.6	0.0	-0.08	0.66	0.78	2.68	3.1	0.005	0.66	0.0	0.05	15.01	0.00	2.543	8.82	2.31	3.3	96.7	0.0	-0.25	1.22	0.68	0.83	2.96	10092	1332	4	0	0	0	0	logfile
✔	8ADW	15372	2024-12-27	2022-07-11	2.95	2.93	2.87	3.0	0.009	1.46	0.0	0.07	22.42	0.01	2.469	8.01	23.33	7.7	92.3	0.0	-4.02	0.51	0.80	4.38	2.9	0.007	0.83	0.0	0.05	20.18	0.00	2.517	12.29	3.77	8.8	91.2	0.0	-3.48	1.27	0.52	0.83	4.14	6920	990	10	0	0	0	0	logfile
✔	7YGD	33816	2024-12-28	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.78	0.0	0.04	25.43	0.01	1.825	28.90	0.00	0.0	0.0	0.0	—	2.07	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	8DNR	27577	2024-12-29	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.003	0.50	0.0	0.05	15.50	0.00	2.532	3.36	1.65	2.7	97.3	0.0	0.79	0.22	0.68	0.85	3.77	10191	1314	6	0	12	0	0	logfile
✔	8ADV	15371	2024-12-27	2022-07-11	2.98	2.99	2.81	3.0	0.006	0.64	0.0	0.05	12.65	0.00	2.127	16.36	1.45	9.3	90.7	0.0	-3.72	0.48	0.86	5.35	3.0	0.006	0.70	0.0	0.05	16.74	0.00	2.525	9.13	3.04	8.2	91.8	0.0	-3.48	0.36	0.48	0.87	5.48	6920	990	10	0	0	0	0	logfile
✔	8ADS	15369	2024-12-27	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.005	0.66	0.0	0.05	16.65	0.00	2.611	9.98	3.46	3.5	96.5	0.0	-3.64	0.54	0.49	0.82	5.76	5170	750	10	0	0	0	0	logfile
✔	8DNC	27563	2024-12-30	2022-07-11	3.3	3.52	3.32	3.5	0.004	0.65	0.0	0.04	14.47	0.00	1.989	9.65	0.00	6.5	93.5	0.0	-1.00	0.69	0.78	2.10	3.5	0.004	0.65	0.0	0.04	16.49	0.00	1.920	8.22	2.16	5.8	94.2	0.0	-0.55	1.16	0.69	0.81	1.96	10672	1300	6	0	5	0	0	logfile
✔	8DNM	27574	2024-12-31	2022-07-11	2.76	3.58	2.88	3.4	0.006	0.85	4.0	0.05	12.93	0.01	2.217	8.35	0.86	3.6	96.4	0.0	-1.12	0.83	0.80	3.99	3.4	0.003	0.57	0.0	0.04	14.67	0.00	2.517	5.04	0.49	3.0	97.0	0.0	0.71	1.21	0.83	0.87	2.97	14880	1932	4	0	0	0	0	logfile
✔	8DNH	27572	2024-12-30	2022-07-11	2.99	3.18	3.05	3.2	0.006	0.88	0.0	0.06	17.00	0.01	2.150	8.51	0.16	3.8	96.2	0.0	0.38	0.58	0.74	1.96	3.1	0.004	0.67	0.0	0.04	18.04	0.00	1.885	4.75	2.69	3.2	96.8	0.0	0.44	1.14	0.67	0.83	2.22	11796	1496	8	0	12	0	0	logfile
✔	7YG8	33811	2024-12-28	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.007	0.69	0.0	0.04	24.59	0.00	1.821	17.34	0.00	0.0	0.0	0.0	—	0.40	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	8DNF	27565	2024-12-30	2022-07-11	3.38	3.71	3.49	3.9	0.004	0.69	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.007	0.76	0.0	0.05	16.61	0.00	1.825	3.29	2.77	5.8	94.2	0.0	-0.92	1.07	0.63	0.88	1.68	11812	1496	8	0	12	0	0	logfile
✔	8DNo	27575	2024-12-31	2022-07-11	3.4	3.13	3.46	3.2	0.013	1.45	0.0	0.06	13.09	0.01	2.298	40.43	4.71	10.4	87.0	2.6	-4.22	0.63	0.74	1.54	3.2	0.003	0.72	0.0	0.04	16.76	0.00	2.466	12.16	3.60	4.6	95.4	0.0	-0.53	1.73	0.60	0.76	1.29	15160	1972	4	0	0	0	0	logfile
✔	8DNE	27564	2024-12-29	2022-07-11	3.5	3.77	3.53	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.7	0.005	0.68	0.0	0.05	16.63	0.00	1.894	9.57	3.04	5.2	94.8	0.0	0.13	1.23	0.69	0.78	1.61	10281	1251	6	0	4	0	0	logfile
✔	8DN8	27556	2024-12-30	2022-07-10	3.7	4.03	3.79	4.0	0.004	0.62	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.005	0.97	1.0	0.04	16.00	0.00	2.168	11.40	2.76	5.8	94.2	0.0	-0.30	0.57	0.73	0.83	1.03	10638	1300	6	0	2	0	0	logfile

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