Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DN5	27555	2024-12-31	2022-07-10	3.63	3.95	3.73	3.9	0.004	0.73	0.0	0.05	11.89	0.01	1.194	14.52	1.52	6.4	93.4	0.2	-0.87	0.67	0.83	2.14	3.9	0.003	0.65	0.0	0.04	14.44	0.00	2.487	7.64	2.58	4.9	94.9	0.2	-0.09	0.95	0.64	0.83	1.74	14081	1689	13	0	47	0	0	logfile
✔	8DN2	27552	2024-12-31	2022-07-10	3.9	4.27	4.08	4.3	0.003	0.65	0.0	0.05	12.21	0.01	1.224	14.88	2.83	5.9	94.0	0.1	0.00	0.62	0.81	2.07	4.3	0.004	0.77	0.0	0.05	14.91	0.00	2.444	11.65	4.54	5.0	95.0	0.0	0.21	0.98	0.59	0.81	1.63	14102	1696	12	0	40	0	0	logfile
✔	8DN8	27556	2024-12-30	2022-07-10	3.7	4.03	3.79	4.0	0.004	0.62	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.005	0.97	1.0	0.04	16.00	0.00	2.168	11.40	2.76	5.8	94.2	0.0	-0.30	0.57	0.73	0.83	1.03	10638	1300	6	0	2	0	0	logfile
✔	7YG1	33804	2024-12-27	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.004	0.92	0.0	0.05	16.97	0.00	2.506	19.92	4.42	8.3	91.6	0.1	-1.68	1.46	0.68	0.68	0.56	6208	770	2	0	0	0	0	logfile
✔	7YFY	33801	2024-12-28	2022-07-09	3.4	3.81	3.42	3.8	0.005	0.86	1.0	0.05	19.54	0.01	1.918	6.81	1.35	5.5	94.4	0.1	-1.34	0.70	0.69	2.33	3.8	0.003	0.69	0.0	0.04	19.98	0.00	1.882	8.78	3.60	5.6	94.4	0.0	-0.88	0.57	0.72	0.75	1.85	6770	734	4	41	2	0	0	logfile
✔	8DMY	27549	2024-12-30	2022-07-09	3.07	3.43	3.15	3.4	0.004	0.62	0.0	0.05	18.68	0.00	2.379	4.32	0.63	3.3	96.7	0.0	-1.24	0.57	0.84	2.69	3.4	0.003	0.63	0.0	0.05	17.52	0.00	2.452	3.08	2.61	4.3	95.7	0.0	-0.10	1.02	0.64	0.88	2.07	11796	1494	8	0	8	0	0	logfile
✔	7YFX	33800	2024-12-27	2022-07-09	3.4	3.66	3.48	3.6	0.005	0.79	0.0	0.05	16.96	0.01	1.969	7.14	0.45	2.4	97.6	0.0	-0.16	0.64	0.71	1.95	3.6	0.003	0.63	0.0	0.04	17.40	0.00	1.950	8.34	3.56	3.0	97.0	0.0	0.39	1.26	0.67	0.77	1.87	6319	746	4	15	2	0	0	logfile
✔	7YG0	33803	2024-12-30	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	16.20	0.00	2.467	23.24	2.80	5.0	94.9	0.1	-0.78	2.16	0.67	0.73	0.21	13336	1708	2	0	0	0	0	logfile
✔	8DMi	27539	2024-12-28	2022-07-08	3.26	4.04	3.27	3.5	0.004	0.81	0.0	0.06	14.47	0.01	2.117	8.99	0.00	5.9	94.1	0.0	-1.20	0.82	0.78	3.33	3.5	0.004	0.80	0.0	0.04	14.83	0.00	2.503	6.76	1.62	4.6	95.4	0.0	0.15	0.77	0.87	0.86	2.88	8259	951	30	0	42	0	0	logfile
✔	8DMo	27545	2024-12-28	2022-07-08	3.9	5.15	3.90	4.1	0.003	0.63	0.0	0.04	14.36	0.00	2.239	9.02	0.00	3.0	96.9	0.1	1.78	0.74	0.67	0.80	4.2	0.003	0.76	0.0	0.04	15.98	0.00	2.491	10.46	0.92	2.4	97.6	0.0	1.96	0.62	0.86	0.87	0.78	8912	1150	2	0	0	0	0	logfile
✔	8DMB	27533	2024-12-30	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	23.25	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.54	0.0	0.03	23.44	0.01	1.993	1.97	1.48	2.5	97.5	0.0	0.63	0.56	0.69	0.83	4.50	14225	328	5	275	2	0	5728	logfile
✔	8DLV	27517	2024-12-27	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.53	0.0	0.04	14.94	0.00	2.482	5.70	1.00	2.5	97.5	0.0	1.79	0.61	0.83	0.87	2.20	6553	797	4	0	7	0	0	logfile
✔	8DLR	27512	2024-12-27	2022-07-08	2.51	3.02	2.49	2.9	0.006	0.81	0.0	0.06	12.71	0.01	2.291	3.79	0.00	2.6	97.4	0.0	-0.80	0.72	0.84	5.48	2.9	0.003	0.57	0.0	0.04	14.37	0.00	2.528	5.05	1.15	2.8	97.2	0.0	-0.35	0.38	0.71	0.85	5.12	4027	505	4	0	6	0	0	logfile
✔	8DLQ	27510	2024-12-27	2022-07-08	2.77	3.49	2.82	3.2	0.006	0.91	0.0	0.06	13.16	0.01	2.296	3.05	0.43	1.8	98.2	0.0	0.35	0.84	0.87	3.52	3.2	0.003	0.58	0.0	0.04	15.20	0.00	2.550	6.02	0.71	1.8	98.2	0.0	1.64	0.64	0.83	0.87	2.55	6552	797	4	0	7	0	0	logfile
✔	8ADN	15365	2024-12-27	2022-07-08	2.77	3.03	2.95	3.0	0.003	0.54	0.0	0.04	15.31	0.00	1.810	4.93	0.85	2.3	97.7	0.0	0.68	0.72	0.82	3.23	3.1	0.004	0.70	0.0	0.04	16.75	0.00	1.356	8.05	1.85	2.3	97.7	0.0	1.04	0.39	0.73	0.83	2.54	48318	6160	30	0	0	0	0	logfile
✔	8DM2	27524	2024-12-27	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.02	0.0	0.07	13.37	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.003	0.68	0.0	0.05	15.55	0.00	2.567	7.99	2.67	5.9	94.1	0.0	-0.81	1.71	0.61	0.75	3.29	2104	249	3	0	6	0	0	logfile
✔	8DM8	27530	2024-12-27	2022-07-08	2.68	3.21	2.72	3.1	0.006	0.89	0.0	0.06	13.50	0.01	2.306	3.39	0.72	1.8	98.2	0.0	-0.72	0.78	0.85	3.05	3.1	0.004	0.63	0.0	0.04	15.59	0.00	2.519	6.24	1.88	2.4	97.6	0.0	1.26	1.21	0.79	0.87	2.93	6479	794	4	0	3	0	0	logfile
✔	8DM6	27528	2024-12-27	2022-07-08	2.77	3.36	2.83	3.3	0.006	0.94	0.0	0.06	14.08	0.01	2.282	3.28	0.57	1.6	98.4	0.0	-0.08	0.77	0.83	2.73	3.2	0.004	0.68	0.0	0.04	16.29	0.00	2.484	7.34	2.43	2.1	97.9	0.0	1.35	1.59	0.76	0.83	3.03	6559	796	4	0	7	0	0	logfile
✔	8DLN	27507	2024-12-27	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.86	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.004	0.61	0.0	0.04	14.88	0.00	2.473	7.42	1.00	2.5	97.5	0.0	1.66	2.31	0.84	0.87	2.85	6553	797	4	0	7	0	0	logfile
✔	8DLS	27514	2024-12-27	2022-07-08	2.66	3.23	2.64	3.1	0.006	0.92	0.0	0.06	12.29	0.01	2.288	4.45	0.00	4.8	95.2	0.0	-0.59	0.70	0.83	4.60	3.1	0.004	0.67	0.0	0.05	14.56	0.00	2.369	8.77	2.76	3.3	96.7	0.0	0.43	0.47	0.70	0.83	4.50	4017	495	5	0	7	0	0	logfile

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