Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y84	33680	2024-12-31	2022-06-22	2.61	2.79	2.65	2.8	0.006	0.68	2.0	0.05	19.40	0.00	1.448	15.72	1.92	1.8	98.2	0.0	-0.44	0.67	0.82	3.54	2.8	0.003	0.55	0.0	0.04	19.51	0.00	1.978	11.80	2.76	1.7	98.3	0.0	0.57	0.36	0.66	0.82	3.12	16081	1894	4	35	5	0	0	logfile
✔	7Y83	33679	2024-12-31	2022-06-22	2.93	3.17	3.05	3.2	0.004	0.57	0.0	0.04	20.60	0.00	1.923	18.19	5.52	3.5	96.5	0.0	0.07	0.66	0.79	2.46	3.2	0.004	0.64	0.0	0.04	20.36	0.00	1.891	14.36	4.66	3.3	96.7	0.0	0.06	0.28	0.63	0.79	2.68	16300	1861	5	59	5	0	0	logfile
✔	8DFS	27412	2024-12-27	2022-06-22	3.0	3.29	3.13	3.3	0.011	0.90	0.0	0.06	18.70	0.00	1.756	7.27	0.23	3.4	96.6	0.0	0.80	0.61	0.74	3.64	3.3	0.003	0.58	0.0	0.04	17.80	0.00	2.135	3.98	2.10	4.3	95.7	0.0	0.41	1.46	0.68	0.81	3.48	49778	3082	13	48	0	0	24538	logfile
✔	8DFM	27408	2024-12-31	2022-06-22	3.45	4.16	3.29	3.6	0.008	1.14	0.0	0.07	12.32	0.01	2.387	1.31	0.00	2.0	98.0	0.0	-0.37	0.88	0.83	3.25	3.6	0.004	0.60	0.0	0.04	11.46	0.00	2.361	3.11	0.60	3.0	97.0	0.0	0.81	1.44	0.88	0.84	3.16	15966	1126	10	0	10	0	7566	logfile
✔	7Y7K	33668	2024-12-27	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.4	0.003	0.78	0.0	0.05	11.04	0.00	2.505	11.19	0.00	6.7	92.8	0.5	-1.80	1.19	0.74	0.68	—	2942	422	3	0	0	0	0	logfile
✔	7Y7Y	33674	2024-12-27	2022-06-22	2.4	2.62	2.37	2.6	0.005	0.73	0.0	0.07	16.87	0.00	1.789	6.02	0.45	3.0	97.0	0.0	0.29	0.72	0.87	3.50	2.6	0.003	0.62	0.0	0.04	16.04	0.00	2.185	5.31	2.68	1.3	98.7	0.0	1.45	0.41	0.71	0.88	3.20	4303	527	2	0	7	54	0	logfile
✔	7Y7i	33666	2024-12-30	2022-06-22	3.42	3.09	3.34	3.3	0.004	0.57	0.0	0.04	28.76	0.00	2.234	8.91	0.15	1.9	98.1	0.0	2.18	0.64	0.77	1.32	3.3	0.003	0.56	0.0	0.04	28.59	0.00	2.476	7.63	2.04	2.0	98.0	0.0	2.55	0.66	0.67	0.80	2.00	12445	824	12	286	0	0	0	logfile
✔	8DFP	27410	2024-12-31	2022-06-22	3.17	3.73	3.15	3.4	0.008	1.13	0.0	0.07	12.92	0.01	2.429	1.23	0.00	1.5	98.5	0.0	-0.93	0.84	0.79	3.52	3.4	0.004	0.59	0.0	0.04	12.08	0.00	2.446	2.83	0.47	2.3	97.7	0.0	0.30	0.57	0.85	0.82	3.49	16124	1118	10	0	10	0	7703	logfile
✔	7Y7W	33672	2024-12-27	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.20	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	2.7	0.003	0.56	0.0	0.04	16.57	0.00	2.216	3.53	2.90	1.7	98.3	0.0	1.85	1.15	0.70	0.87	3.86	4310	529	2	0	7	48	0	logfile
✔	8DFQ	27411	2024-12-31	2022-06-22	3.96	4.53	3.89	4.0	0.007	1.12	0.0	0.06	13.05	0.01	2.270	0.98	0.15	1.8	98.2	0.0	-1.00	0.84	0.79	2.57	4.0	0.003	0.62	0.0	0.04	11.44	0.00	2.418	2.10	0.45	3.8	96.2	0.0	-0.15	0.58	0.84	0.81	1.84	14233	1114	8	0	7	0	6514	logfile
✔	7Y7V	33671	2024-12-27	2022-06-22	2.2	2.46	2.24	2.4	0.005	0.73	0.0	0.07	16.08	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.004	0.62	0.0	0.05	15.66	0.00	2.598	4.80	3.54	2.5	97.5	0.0	1.48	0.35	0.69	0.87	4.05	4341	532	2	0	4	58	0	logfile
✔	8A7o	15222	2024-12-27	2022-06-21	3.0	3.15	2.97	3.0	0.002	0.55	0.0	0.04	11.28	0.00	2.029	6.71	0.00	2.9	97.1	0.0	-3.59	0.50	0.88	5.55	2.9	0.005	0.69	0.0	0.05	14.58	0.00	2.492	4.59	1.61	7.9	92.1	0.0	-3.61	1.40	0.49	0.91	5.09	4362	528	6	0	0	0	0	logfile
✔	7Y6L	33643	2024-12-27	2022-06-21	3.5	3.06	3.33	3.4	0.004	0.54	0.0	0.04	15.59	0.00	2.198	9.08	0.56	2.2	97.8	0.0	-0.30	0.47	0.76	2.09	3.4	0.005	0.64	0.0	0.05	16.69	0.00	2.542	7.69	6.48	3.6	96.4	0.0	-0.31	0.91	0.61	0.81	2.51	3308	422	4	0	1	0	0	logfile
✔	7Y6U	33648	2024-12-29	2022-06-21	3.2	4.00	3.27	3.5	0.004	0.69	0.0	0.05	18.86	0.00	2.170	7.45	0.00	5.5	94.2	0.3	-0.28	0.66	0.83	3.27	3.5	0.002	0.62	0.0	0.05	14.47	0.00	2.514	6.12	1.91	4.8	94.8	0.3	-0.42	1.11	0.66	0.84	2.80	9915	1224	13	0	40	0	0	logfile
✔	7Y6V	33649	2024-12-29	2022-06-21	3.3	4.21	3.47	3.6	0.004	0.74	0.0	0.06	17.91	0.00	2.149	10.16	0.00	5.7	94.0	0.2	-0.46	0.64	0.82	2.69	3.6	0.002	0.65	0.0	0.05	14.35	0.00	2.419	7.15	1.24	5.6	94.1	0.2	-0.54	0.35	0.64	0.83	2.56	9988	1224	16	0	45	0	0	logfile
✔	8A7Q	15224	2024-12-27	2022-06-21	2.8	3.63	2.72	3.4	0.004	0.67	0.0	0.05	11.64	0.00	2.197	7.83	0.00	3.2	96.8	0.0	-5.05	0.45	0.75	5.43	3.4	0.005	1.17	0.0	0.05	16.35	0.00	2.504	13.47	2.46	7.9	92.1	0.0	-4.89	4.62	0.41	0.75	3.27	6492	768	12	0	0	0	0	logfile
✔	8DEX	27402	2024-12-27	2022-06-21	2.7	2.85	2.68	2.9	0.012	0.95	1.0	0.06	18.60	0.01	1.790	4.35	0.96	3.2	96.8	0.0	0.67	0.46	0.61	4.27	2.9	0.003	0.59	0.0	0.04	18.07	0.00	2.254	2.57	2.01	3.3	96.7	0.0	0.51	1.11	0.67	0.81	4.17	46307	2857	12	48	0	0	22829	logfile
✔	8DEP	27394	2024-12-27	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	19.70	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.60	0.0	0.03	13.22	0.00	2.582	6.08	2.59	1.3	98.7	0.0	3.09	0.66	0.45	0.77	1.78	3223	398	2	0	4	0	0	logfile
✔	8DFA	27403	2024-12-27	2022-06-21	2.8	3.02	2.79	3.0	0.037	2.80	322.0	0.32	16.53	0.01	1.474	3.88	1.63	5.3	94.6	0.0	-1.30	0.69	0.65	3.15	3.0	0.004	0.70	0.0	0.06	17.86	0.01	2.275	3.11	1.51	5.2	94.8	0.0	-0.37	1.77	0.80	0.83	2.73	46813	2855	13	64	0	0	23023	logfile
✔	8A7P	15223	2024-12-27	2022-06-21	3.4	3.32	3.49	3.5	0.002	0.54	0.0	0.04	10.48	0.01	2.313	6.43	1.83	4.7	95.3	0.0	-3.55	0.44	0.77	3.05	3.5	0.004	0.75	0.0	0.05	14.99	0.00	2.505	6.91	2.85	8.4	91.6	0.0	-3.84	0.78	0.45	0.80	3.08	4320	522	6	0	0	0	0	logfile

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