Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DFA	27403	2024-12-27	2022-06-21	2.8	3.02	2.79	3.0	0.037	2.80	322.0	0.32	16.53	0.01	1.474	3.88	1.63	5.3	94.6	0.0	-1.30	0.69	0.65	3.15	3.0	0.004	0.70	0.0	0.06	17.86	0.01	2.275	3.11	1.51	5.2	94.8	0.0	-0.37	1.77	0.80	0.83	2.73	46813	2855	13	64	0	0	23023	logfile
✔	8DEX	27402	2024-12-27	2022-06-21	2.7	2.85	2.68	2.9	0.012	0.95	1.0	0.06	18.60	0.01	1.790	4.35	0.96	3.2	96.8	0.0	0.67	0.46	0.61	4.27	2.9	0.003	0.59	0.0	0.04	18.07	0.00	2.254	2.57	2.01	3.3	96.7	0.0	0.51	1.11	0.67	0.81	4.17	46307	2857	12	48	0	0	22829	logfile
✔	8A7P	15223	2024-12-27	2022-06-21	3.4	3.32	3.49	3.5	0.002	0.54	0.0	0.04	10.48	0.01	2.313	6.43	1.83	4.7	95.3	0.0	-3.55	0.44	0.77	3.05	3.5	0.004	0.75	0.0	0.05	14.99	0.00	2.505	6.91	2.85	8.4	91.6	0.0	-3.84	0.78	0.45	0.80	3.08	4320	522	6	0	0	0	0	logfile
✔	7Y6V	33649	2024-12-29	2022-06-21	3.3	4.21	3.47	3.6	0.004	0.74	0.0	0.06	17.91	0.00	2.149	10.16	0.00	5.7	94.0	0.2	-0.46	0.64	0.82	2.69	3.6	0.002	0.65	0.0	0.05	14.35	0.00	2.419	7.15	1.24	5.6	94.1	0.2	-0.54	0.35	0.64	0.83	2.56	9988	1224	16	0	45	0	0	logfile
✔	7Y6K	33642	2024-12-27	2022-06-20	3.34	3.42	3.31	3.4	0.004	0.65	0.0	0.04	14.23	0.01	2.222	15.89	0.57	4.9	95.1	0.0	-1.02	0.70	0.79	2.98	3.4	0.003	0.60	0.0	0.04	15.48	0.00	2.394	10.84	3.00	3.7	96.3	0.0	-0.61	1.83	0.70	0.81	2.82	6363	834	5	0	1	0	0	logfile
✔	8A7D	15220	2024-12-29	2022-06-20	3.06	3.45	3.18	3.4	0.004	0.76	0.0	0.05	14.79	0.01	2.115	7.59	0.50	5.3	94.2	0.5	-0.22	0.64	0.77	2.66	3.4	0.004	0.65	0.0	0.05	15.84	0.00	2.212	6.16	2.94	5.0	94.8	0.2	0.11	0.50	0.60	0.75	2.40	10771	1361	5	0	17	0	0	logfile
✔	8DE6	27385	2024-12-30	2022-06-20	3.2	3.41	3.23	3.4	0.010	0.93	0.0	0.06	14.68	0.01	2.169	4.54	2.53	4.0	96.0	0.0	-0.86	0.70	0.82	3.02	3.4	0.005	0.62	0.0	0.04	14.56	0.00	2.199	3.23	3.21	4.3	95.7	0.0	-1.08	0.56	0.72	0.85	2.96	13243	1659	10	0	12	0	0	logfile
✔	8DE7	27386	2024-12-27	2022-06-20	3.27	4.01	3.23	3.8	0.006	1.05	0.0	0.06	16.51	0.01	2.304	8.39	0.90	2.1	97.9	0.0	4.08	0.61	0.78	1.97	3.8	0.004	1.01	0.0	0.05	17.00	0.01	2.479	15.13	3.60	2.5	97.5	0.0	2.19	0.93	0.56	0.75	1.09	4168	526	4	0	4	0	0	logfile
✔	8DE9	27388	2024-12-27	2022-06-20	3.4	4.08	3.48	3.9	0.005	1.12	0.0	0.06	14.38	0.01	2.309	8.02	0.23	3.3	96.7	0.0	2.27	0.60	0.77	1.86	3.9	0.004	0.99	0.0	0.05	17.10	0.00	2.455	14.00	1.60	4.1	95.9	0.0	1.90	2.06	0.55	0.76	1.71	4115	517	3	0	4	0	0	logfile
✔	8DDY	27382	2024-12-28	2022-06-19	2.89	2.51	2.86	2.8	0.016	1.75	0.0	0.07	16.38	0.01	2.247	4.49	3.82	4.8	95.2	0.0	-2.48	0.54	0.84	3.00	2.8	0.003	0.67	0.0	0.04	17.77	0.00	2.599	7.68	2.16	2.7	97.3	0.0	2.21	0.47	0.55	0.85	2.32	7968	954	18	0	9	330	0	logfile
✔	8DE4	27384	2024-12-27	2022-06-19	2.9	3.20	2.90	3.3	0.009	0.79	0.0	0.23	18.02	0.01	2.096	10.13	4.35	3.0	97.0	0.0	0.28	0.50	0.66	1.62	3.3	0.003	0.56	0.0	0.04	16.37	0.00	2.363	9.97	5.12	5.3	94.7	0.0	-0.16	0.88	0.53	0.69	1.83	6188	767	5	0	9	0	0	logfile
✔	8DE3	27383	2024-12-27	2022-06-19	3.3	3.58	3.29	3.6	0.008	0.69	0.0	0.05	17.06	0.00	2.178	8.58	0.16	3.0	97.0	0.0	0.95	0.59	0.72	1.11	3.6	0.004	0.59	0.0	0.04	16.44	0.00	2.216	9.71	4.81	4.5	95.5	0.0	0.44	0.38	0.61	0.78	1.23	6199	767	5	0	9	0	0	logfile
✔	7Y63	33632	2024-12-29	2022-06-18	3.16	3.52	3.25	3.4	0.006	0.70	0.0	0.05	18.69	0.01	2.214	10.48	0.00	6.0	94.0	0.0	-2.24	0.69	0.82	2.54	3.4	0.003	0.64	0.0	0.04	16.13	0.00	2.524	6.00	1.70	4.8	95.2	0.0	-0.20	1.23	0.67	0.82	2.46	9924	1238	8	0	16	0	0	logfile
✔	7Y66	33635	2024-12-29	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	2.144	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.60	0.0	0.04	15.79	0.00	2.492	4.50	2.38	3.0	97.0	0.0	0.82	0.44	0.79	0.81	2.40	8917	1139	7	0	2	0	0	logfile
✔	7Y69	33638	2024-12-29	2022-06-18	3.21	3.59	3.28	3.5	0.008	0.83	0.0	0.06	21.16	0.01	2.028	16.09	0.00	9.2	90.8	0.0	-2.24	0.68	0.81	3.25	3.5	0.003	0.64	0.0	0.04	15.98	0.00	2.555	6.84	1.52	5.5	94.5	0.0	-0.02	0.41	0.67	0.80	3.02	10090	1274	8	0	16	0	0	logfile
✔	7Y65	33634	2024-12-29	2022-06-18	3.2	3.41	3.19	3.4	0.003	0.59	0.0	0.15	14.43	0.01	2.183	8.62	0.85	3.2	96.7	0.1	0.35	0.61	0.70	1.73	3.4	0.005	0.71	0.0	0.05	16.20	0.00	2.431	7.07	2.44	4.3	95.7	0.0	0.18	0.57	0.66	0.78	2.17	8721	1109	7	0	1	0	0	logfile
✔	7Y67	33636	2024-12-29	2022-06-18	2.8	2.24	2.75	2.1	0.003	0.69	0.0	0.04	13.10	0.01	1.329	7.05	0.10	2.5	97.5	0.0	0.59	0.78	0.77	2.53	2.1	0.004	0.60	0.0	0.04	16.91	0.00	2.503	4.34	1.98	3.3	96.7	0.0	0.67	0.97	0.80	0.82	2.64	8889	1135	7	0	1	0	0	logfile
✔	7Y60	33630	2024-12-30	2022-06-18	3.8	5.07	3.90	3.8	0.004	0.67	0.0	0.04	28.44	0.00	2.200	17.05	1.30	4.0	96.0	0.0	-0.08	0.81	0.68	0.94	3.9	0.004	0.83	0.0	0.04	29.23	0.00	2.002	19.09	4.09	3.0	97.0	0.0	0.21	0.84	0.90	0.85	0.78	11378	1004	12	216	0	0	0	logfile
✔	7Y68	33637	2024-12-29	2022-06-18	2.87	3.37	3.03	3.3	0.005	0.70	0.0	0.05	22.41	0.01	2.213	11.36	0.09	5.3	94.7	0.0	-1.61	0.68	0.82	3.50	3.3	0.003	0.64	0.0	0.04	15.85	0.00	2.513	7.19	0.85	5.4	94.6	0.0	0.05	1.20	0.65	0.80	2.88	10264	1300	8	0	18	0	0	logfile
✔	7Y5W	33627	2024-12-28	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.005	0.89	0.0	0.04	28.77	0.00	2.022	18.59	4.05	2.3	97.7	0.0	1.04	0.96	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile

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