Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y5Q	33622	2024-12-30	2022-06-17	3.8	3.59	3.74	3.8	0.005	0.68	0.0	0.05	13.44	0.01	2.314	4.83	6.70	5.6	94.4	0.0	-2.13	0.74	0.77	2.61	3.8	0.005	0.65	0.0	0.04	15.22	0.00	2.422	7.60	3.63	5.9	94.1	0.0	-1.18	0.43	0.74	0.77	2.58	12762	1634	4	0	1	0	0	logfile
✔	8DD8	27336	2024-12-29	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.34	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.003	0.55	0.0	0.04	16.79	0.00	2.494	7.63	0.68	4.2	95.7	0.1	0.23	1.22	0.83	0.84	1.98	10492	1272	2	0	0	0	0	logfile
✔	7Y5W	33627	2024-12-28	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.005	0.89	0.0	0.04	28.77	0.00	2.022	18.59	4.05	2.3	97.7	0.0	1.04	0.96	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile
✔	7Y5H	33620	2024-12-27	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.64	0.0	0.04	15.59	0.00	2.018	5.85	1.52	1.7	98.3	0.0	1.57	1.09	0.66	0.80	1.24	4704	600	4	0	4	0	0	logfile
✔	7Y5S	33623	2024-12-29	2022-06-17	3.0	2.29	2.98	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.005	0.77	0.0	0.05	15.72	0.01	2.341	12.59	2.48	8.9	91.1	0.0	-2.35	1.33	0.79	0.79	3.48	11535	1515	3	0	0	0	0	logfile
✔	7Y5U	33625	2024-12-31	2022-06-17	3.8	4.49	3.82	4.2	0.002	0.62	0.0	0.04	12.27	0.00	2.212	12.78	0.11	4.0	96.0	0.0	-0.20	0.80	0.69	1.18	4.2	0.003	0.77	0.0	0.05	14.96	0.00	2.400	15.08	1.60	4.4	95.6	0.0	-0.35	3.39	0.85	0.79	1.13	8865	1139	5	0	0	0	0	logfile
✔	7Y5G	33619	2024-12-27	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.50	0.0	0.04	15.10	0.00	2.071	4.17	2.64	0.7	99.3	0.0	1.55	0.64	0.65	0.75	-0.42	4736	604	4	0	6	0	0	logfile
✔	8DD7	27335	2024-12-29	2022-06-17	3.3	3.57	3.30	3.4	0.005	0.94	0.0	0.05	17.63	0.01	2.272	11.26	0.44	6.7	93.3	0.0	-2.46	0.82	0.77	1.51	3.4	0.003	0.66	0.0	0.04	17.72	0.00	2.550	9.48	2.45	5.4	94.6	0.0	0.22	0.55	0.84	0.83	1.37	10370	1275	3	0	1	0	0	logfile
✔	8DCX	27330	2024-12-29	2022-06-17	2.8	3.32	3.33	3.4	0.003	0.58	0.0	0.04	14.71	0.00	2.195	13.47	0.00	5.4	94.6	0.1	-0.04	0.48	0.60	0.77	3.4	0.005	0.99	0.0	0.05	16.82	0.00	2.357	12.74	1.12	3.9	95.9	0.2	0.16	0.45	0.44	0.60	0.55	9627	1166	2	0	0	0	0	logfile
✔	7Y4S	33606	2024-12-27	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.60	0.0	0.04	15.20	0.00	2.516	6.79	3.23	2.2	97.8	0.0	2.36	1.58	0.71	0.77	2.45	4940	686	2	0	0	0	0	logfile
✔	8A5Y	15199	2024-12-29	2022-06-16	4.9	5.07	4.78	4.9	0.004	0.88	4.0	0.05	13.25	0.00	1.998	18.51	0.05	3.9	95.8	0.4	0.86	0.85	0.76	—	4.9	0.003	0.69	0.0	0.04	13.66	0.00	1.752	12.72	0.00	3.9	95.9	0.2	0.48	0.68	0.86	0.78	—	57866	7213	18	0	3	0	0	logfile
✔	7Y4W	33608	2024-12-26	2022-06-16	3.67	4.29	3.79	4.1	0.002	0.62	0.0	0.04	14.25	0.00	2.137	8.86	0.00	8.1	91.4	0.4	0.01	0.79	0.81	1.11	4.1	0.003	0.66	0.0	0.04	16.07	0.00	2.459	8.00	1.57	7.7	92.0	0.3	0.21	1.17	0.80	0.81	0.97	42776	5385	14	0	4	0	0	logfile
✔	7Y53	33611	2024-12-26	2022-06-16	3.61	4.15	3.76	4.0	0.004	0.71	0.0	0.05	15.24	0.01	2.119	10.11	0.00	8.6	91.0	0.4	-0.33	0.77	0.78	1.33	4.0	0.003	0.71	0.0	0.04	16.54	0.00	2.371	8.36	1.24	7.3	92.4	0.3	-0.05	1.19	0.78	0.80	1.00	42966	5382	16	0	12	0	0	logfile
✔	7Y58	33612	2024-12-27	2022-06-16	3.8	4.04	3.79	4.1	0.005	0.88	3.0	0.05	18.11	0.02	2.068	14.85	3.38	10.0	90.0	0.0	-1.41	0.54	0.76	1.61	4.1	0.004	0.72	0.0	0.04	18.17	0.00	2.538	8.49	5.58	8.6	91.1	0.3	-0.41	0.60	0.60	0.82	1.55	5606	743	3	0	0	0	0	logfile
✔	8A5o	15179	2024-12-30	2022-06-15	3.2	3.27	3.09	3.2	0.016	1.87	2.0	0.10	14.34	0.01	1.981	1.08	0.72	3.8	96.0	0.2	-1.14	0.70	0.80	3.54	3.2	0.004	0.58	0.0	0.04	16.38	0.00	2.219	4.24	1.87	2.2	97.7	0.1	1.27	1.61	0.81	0.86	2.37	12571	1555	8	0	6	0	0	logfile
✔	8DBZ	27318	2024-12-28	2022-06-15	4.1	4.31	4.14	4.2	0.003	0.73	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.003	0.75	0.0	0.05	13.34	0.01	2.302	14.52	0.00	4.7	95.3	0.0	-1.68	0.60	0.63	0.63	—	7960	1184	9	0	0	0	0	logfile
✔	8DC2	27320	2024-12-28	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.1	0.004	0.66	0.0	0.04	20.97	0.00	2.446	10.91	1.93	3.7	96.3	0.0	0.78	0.37	0.83	0.85	2.68	7296	673	4	87	0	0	0	logfile
✔	8A5P	15180	2024-12-30	2022-06-15	3.4	4.19	3.47	3.6	0.011	1.65	3.0	0.10	17.87	0.02	1.816	2.29	0.90	3.3	96.6	0.1	-1.12	0.93	0.90	2.49	3.6	0.003	0.60	0.0	0.04	18.46	0.00	1.986	6.43	1.13	2.8	97.1	0.1	1.78	1.99	0.91	0.87	2.25	13937	1550	10	72	6	0	0	logfile
✔	8DBo	27293	2024-12-31	2022-06-14	2.5	2.48	2.52	2.5	0.007	1.02	0.0	0.05	18.64	0.00	1.866	10.11	3.37	4.1	95.9	0.0	0.90	0.61	0.74	3.60	2.5	0.004	0.75	0.0	0.05	18.76	0.00	1.900	7.96	3.37	4.6	95.4	0.0	-0.32	0.69	0.68	0.78	3.71	14880	1896	18	0	30	18	0	logfile
✔	7Y48	33603	2024-12-28	2022-06-14	2.85	2.13	2.80	2.0	0.010	0.84	0.0	0.04	13.51	0.01	2.271	9.22	0.90	2.3	97.7	0.0	1.13	0.51	0.74	2.02	2.0	0.003	0.53	0.0	0.04	15.45	0.00	2.496	3.34	1.13	1.4	98.6	0.0	1.94	0.38	0.53	0.78	1.58	4324	567	2	0	2	0	0	logfile

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