Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A5D	15165	2024-12-30	2022-06-14	2.9	3.06	2.94	3.0	0.016	1.88	1.0	0.09	14.05	0.01	2.001	0.82	0.23	2.6	97.3	0.1	-0.81	0.72	0.80	4.42	3.0	0.003	0.58	0.0	0.04	16.25	0.00	2.017	4.00	1.92	2.7	97.3	0.0	1.68	0.52	0.80	0.85	3.31	12222	1519	8	0	6	0	0	logfile
✔	8A5A	15163	2024-12-30	2022-06-14	3.3	3.49	3.27	3.5	0.016	2.08	3.0	0.10	15.44	0.01	1.838	3.05	2.26	4.9	94.7	0.4	-2.22	0.56	0.66	3.59	3.5	0.003	0.58	0.0	0.04	16.24	0.00	1.992	4.50	2.06	2.5	97.3	0.1	1.07	1.22	0.73	0.83	2.34	13191	1629	8	0	6	0	0	logfile
✔	7Y49	33604	2024-12-28	2022-06-14	3.67	2.35	3.54	2.2	0.003	0.59	0.0	0.04	14.27	0.00	2.317	5.03	0.47	3.8	96.2	0.0	0.44	0.49	0.66	2.02	2.2	0.004	0.59	0.0	0.04	15.98	0.00	2.541	4.31	2.12	4.5	95.3	0.2	0.39	0.92	0.49	0.69	1.50	4169	565	1	0	0	0	0	logfile
✔	8DBG	27283	2024-12-31	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	17.53	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.004	0.57	0.0	0.05	16.82	0.00	1.963	4.47	1.91	4.0	96.0	0.0	0.89	0.31	0.74	0.91	5.77	14442	1854	18	0	30	12	0	logfile
✔	8DBo	27293	2024-12-31	2022-06-14	2.5	2.48	2.52	2.5	0.007	1.02	0.0	0.05	18.64	0.00	1.866	10.11	3.37	4.1	95.9	0.0	0.90	0.61	0.74	3.60	2.5	0.004	0.75	0.0	0.05	18.76	0.00	1.900	7.96	3.37	4.6	95.4	0.0	-0.32	0.69	0.68	0.78	3.71	14880	1896	18	0	30	18	0	logfile
✔	8DAD	27270	2024-12-27	2022-06-13	3.85	4.05	3.91	4.0	0.004	0.83	1.0	0.05	17.77	0.01	2.238	16.32	0.63	5.0	95.0	0.0	-0.96	0.65	0.73	1.59	3.9	0.004	0.76	0.0	0.05	16.24	0.01	2.509	13.44	5.40	5.0	95.0	0.0	-0.90	0.44	0.65	0.74	2.01	3255	424	5	0	4	0	0	logfile
✔	8DAQ	27272	2024-12-28	2022-06-13	4.35	4.68	4.29	4.5	0.003	0.56	0.0	0.05	13.37	0.00	1.857	13.50	0.00	5.0	95.0	0.0	-1.37	0.72	0.61	—	4.5	0.005	0.69	0.0	0.04	13.25	0.00	2.273	13.18	0.00	8.9	91.1	0.1	-1.90	1.51	0.80	0.79	—	52100	3412	16	0	8	0	25764	logfile
✔	8A4L	15148	2024-12-28	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.005	0.64	0.0	0.05	17.37	0.00	2.517	8.79	4.62	2.9	97.1	0.0	-3.64	1.16	0.53	0.87	5.67	7755	1125	15	0	0	0	0	logfile
✔	8D9X	27269	2024-12-30	2022-06-11	3.8	2.68	3.64	2.8	0.004	0.71	2.0	0.04	13.94	0.01	2.217	13.63	0.58	3.9	96.1	0.0	0.05	0.72	0.71	1.68	2.8	0.003	0.64	0.0	0.04	17.44	0.00	2.508	10.41	5.35	3.4	96.6	0.0	0.72	1.26	0.73	0.72	1.41	12670	1680	8	0	0	0	0	logfile
✔	7Y38	33591	2024-12-28	2022-06-10	2.8	3.48	2.94	3.3	0.010	0.72	0.0	0.04	15.47	0.00	2.113	3.70	0.04	3.8	96.2	0.1	-0.63	0.78	0.83	2.85	3.3	0.003	0.63	0.0	0.04	15.97	0.00	2.022	3.22	0.61	4.3	95.7	0.1	-0.01	0.38	0.79	0.87	2.32	53135	6704	27	3	36	0	0	logfile
✔	8D9M	27266	2024-12-31	2022-06-10	4.2	3.57	4.20	3.3	0.007	1.02	0.0	0.05	16.46	0.01	1.684	31.60	0.45	17.2	82.8	0.0	-2.61	0.83	0.80	—	3.2	0.007	0.97	0.0	0.05	16.51	0.00	1.549	16.87	0.00	13.4	86.6	0.0	-2.68	0.59	0.83	0.80	—	15967	1806	14	0	56	0	0	logfile
✔	7Y3E	33592	2024-12-31	2022-06-10	2.8	2.97	2.80	3.1	0.004	0.71	0.0	0.04	14.07	0.00	2.197	12.01	0.00	6.0	94.0	0.0	0.52	0.64	0.80	2.34	3.1	0.003	0.58	0.0	0.04	17.07	0.00	2.559	8.27	3.19	4.1	95.9	0.0	1.31	0.47	0.63	0.82	2.02	14572	1856	4	0	4	0	0	logfile
✔	8D9N	27267	2024-12-28	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.69	0.0	0.04	13.29	0.00	2.434	4.56	0.00	4.6	95.4	0.0	0.35	0.56	0.34	-0.06	—	7186	902	2	0	0	0	0	logfile
✔	7Y36	33590	2024-12-28	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.73	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.004	0.82	0.0	0.05	16.69	0.01	2.396	10.13	2.93	3.8	96.2	0.0	1.04	1.44	0.62	0.76	2.04	9206	1151	7	0	1	0	0	logfile
✔	7Y3G	33594	2024-12-28	2022-06-10	2.77	2.32	2.89	2.1	0.004	0.66	0.0	0.04	16.44	0.01	2.029	7.02	3.04	3.9	96.1	0.0	0.49	0.79	0.81	2.50	2.1	0.003	0.61	0.0	0.04	16.57	0.00	2.420	3.64	2.58	3.9	96.1	0.0	0.91	1.14	0.80	0.82	1.89	7864	1001	5	0	0	0	0	logfile
✔	8D9L	27265	2024-12-27	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.005	0.64	0.0	0.04	17.49	0.00	2.164	15.24	0.00	3.3	96.7	0.0	0.50	0.65	0.90	0.84	—	5757	553	4	65	1	0	0	logfile
✔	7Y35	33588	2024-12-28	2022-06-09	2.9	2.79	2.85	3.0	0.009	0.80	0.0	0.05	12.99	0.01	2.217	5.09	0.10	4.0	96.0	0.0	-1.37	0.84	0.82	3.23	3.1	0.003	0.73	0.0	0.04	17.12	0.00	2.494	6.68	2.43	3.2	96.8	0.0	1.18	1.28	0.85	0.85	3.03	9191	1150	7	0	1	0	0	logfile
✔	7Y26	33586	2024-12-28	2022-06-09	3.3	3.67	3.39	3.7	0.003	0.57	0.0	0.04	12.62	0.00	2.203	4.71	0.00	3.0	97.0	0.0	0.69	0.66	0.80	3.02	3.7	0.002	0.57	0.0	0.04	14.63	0.00	2.188	3.40	1.19	3.0	97.0	0.0	0.67	0.38	0.66	0.81	2.45	8014	1111	7	0	2	0	0	logfile
✔	8D97	27257	2024-12-31	2022-06-09	3.8	3.96	3.72	3.8	0.004	0.64	0.0	0.04	17.28	0.00	2.113	8.76	0.00	5.1	94.9	0.0	-2.43	0.87	0.87	2.06	3.8	0.002	0.50	0.0	0.04	17.80	0.00	2.504	5.08	0.57	3.2	96.8	0.0	-0.02	0.42	0.87	0.85	1.96	13874	1600	3	42	4	0	0	logfile
✔	7Y27	33587	2024-12-28	2022-06-09	3.48	3.96	3.59	3.9	0.012	0.63	0.0	0.06	13.37	0.00	2.204	5.95	0.00	3.7	96.2	0.1	0.16	0.67	0.81	2.45	4.0	0.002	0.56	0.0	0.04	14.97	0.00	2.414	3.83	2.07	3.2	96.8	0.0	0.86	0.95	0.67	0.82	1.89	8184	1137	7	0	1	0	0	logfile

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