Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y35	33588	2024-12-28	2022-06-09	2.9	2.79	2.85	3.0	0.009	0.80	0.0	0.05	12.99	0.01	2.217	5.09	0.10	4.0	96.0	0.0	-1.37	0.84	0.82	3.23	3.1	0.003	0.73	0.0	0.04	17.12	0.00	2.494	6.68	2.43	3.2	96.8	0.0	1.18	1.28	0.85	0.85	3.03	9191	1150	7	0	1	0	0	logfile
✔	8D97	27257	2024-12-31	2022-06-09	3.8	3.96	3.72	3.8	0.004	0.64	0.0	0.04	17.28	0.00	2.113	8.76	0.00	5.1	94.9	0.0	-2.43	0.87	0.87	2.06	3.8	0.002	0.50	0.0	0.04	17.80	0.00	2.504	5.08	0.57	3.2	96.8	0.0	-0.02	0.42	0.87	0.85	1.96	13874	1600	3	42	4	0	0	logfile
✔	8A3T	15123	2024-12-30	2022-06-09	3.5	4.11	4.11	4.0	0.004	0.75	0.0	0.04	14.99	0.00	1.542	18.91	0.10	3.9	95.9	0.2	0.49	0.80	0.75	0.73	4.0	0.003	0.71	2.0	0.04	16.09	0.00	2.031	11.78	2.25	4.2	95.7	0.2	1.06	0.49	0.80	0.76	0.64	61351	7661	20	0	3	0	0	logfile
✔	8D8N	27252	2024-12-30	2022-06-08	3.6	4.03	3.70	4.1	0.008	0.84	1.0	0.05	18.21	0.01	1.828	13.60	0.28	11.2	88.5	0.3	-4.01	0.75	0.76	2.10	4.0	0.003	0.64	0.0	0.04	18.90	0.00	2.058	5.86	2.96	5.6	94.1	0.3	-0.93	0.73	0.77	0.80	2.27	11275	1256	4	56	4	0	0	logfile
✔	7Y1R	33571	2024-12-28	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.72	0.0	0.04	12.97	0.00	2.398	7.97	0.00	6.7	93.3	0.0	-2.61	0.56	0.62	0.60	—	8565	1041	11	0	20	0	0	logfile
✔	7Y1M	33566	2024-12-29	2022-06-08	3.57	3.80	3.54	3.7	0.004	0.53	0.0	0.04	12.73	0.00	2.234	8.36	0.33	2.1	97.9	0.0	2.52	0.69	0.85	1.58	3.8	0.003	0.61	0.0	0.04	14.82	0.00	1.959	6.80	2.41	1.3	98.7	0.0	2.83	0.47	0.69	0.85	1.09	8957	1166	2	0	5	0	0	logfile
✔	7Y1K	33564	2024-12-28	2022-06-08	3.8	4.04	3.87	4.0	0.005	0.61	0.0	0.04	12.89	0.00	2.011	7.48	2.96	1.7	98.3	0.0	0.96	0.66	0.82	2.35	4.0	0.003	0.64	0.0	0.04	14.65	0.00	1.932	8.50	3.69	1.7	98.3	0.0	2.38	1.03	0.65	0.81	1.49	8510	1164	2	0	5	0	0	logfile
✔	7Y1N	33567	2024-12-28	2022-06-08	3.61	3.87	3.57	3.8	0.005	0.70	0.0	0.04	12.08	0.00	2.118	8.54	1.30	2.2	97.8	0.0	2.40	0.67	0.85	2.14	3.8	0.003	0.62	0.0	0.04	14.52	0.00	1.946	6.46	2.83	1.0	99.0	0.0	2.81	0.48	0.67	0.84	1.53	8763	1171	2	0	5	0	0	logfile
✔	7Y1J	33563	2024-12-29	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	12.14	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.003	0.49	0.0	0.04	15.15	0.00	1.968	5.29	1.67	1.2	98.8	0.0	2.71	0.44	0.70	0.86	3.11	9487	1204	2	0	5	0	0	logfile
✔	8D8J	27249	2024-12-28	2022-06-08	3.8	3.18	3.54	3.0	0.003	0.66	0.0	0.42	20.92	0.01	1.928	4.14	0.04	2.2	97.8	0.0	0.35	0.53	0.69	2.35	3.1	0.006	0.95	0.0	0.13	21.04	0.00	1.829	10.42	2.99	3.2	96.8	0.0	0.48	2.19	0.54	0.70	2.05	51386	3402	18	1183	30	0	0	logfile
✔	8D8R	27255	2024-12-27	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	10.92	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.004	0.78	0.0	0.05	13.44	0.01	2.344	14.13	0.28	7.6	92.4	0.0	-0.69	1.89	0.63	0.67	—	3323	425	4	0	1	0	0	logfile
✔	7Y1L	33565	2024-12-28	2022-06-08	3.73	3.98	3.74	3.9	0.005	0.59	0.0	0.04	12.44	0.00	2.202	8.44	1.03	1.8	98.2	0.0	2.57	0.64	0.85	1.27	3.9	0.003	0.61	0.0	0.04	14.70	0.00	2.018	8.44	2.17	1.3	98.7	0.0	2.67	0.46	0.64	0.85	0.93	8955	1189	2	0	5	0	0	logfile
✔	8D8o	27253	2024-12-30	2022-06-08	3.35	3.59	3.32	3.5	0.004	0.57	0.0	0.04	15.92	0.01	2.133	7.67	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.004	0.60	0.0	0.04	16.50	0.00	2.356	6.14	3.65	6.5	93.5	0.0	-0.90	0.28	0.74	0.83	2.34	11819	1536	3	0	1	0	0	logfile
✔	7Y1B	33559	2024-12-27	2022-06-08	3.23	3.55	3.34	3.5	0.006	0.64	0.0	0.05	14.26	0.01	2.340	4.92	0.00	9.8	90.2	0.0	-1.42	0.74	0.84	3.37	3.4	0.003	0.61	0.0	0.04	15.89	0.01	2.543	3.07	1.27	5.4	94.6	0.0	-0.13	0.90	0.71	0.85	3.27	4137	541	3	0	0	0	0	logfile
✔	8D8Q	27254	2024-12-27	2022-06-08	4.2	3.68	34.06	3.7	0.012	1.23	0.0	0.05	11.02	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.003	0.70	0.0	0.04	13.11	0.01	2.516	9.30	0.00	4.9	95.1	0.0	-0.52	1.01	0.67	0.75	—	5202	669	6	0	1	0	0	logfile
✔	8D7H	27230	2024-12-30	2022-06-07	3.4	3.69	3.48	3.6	0.003	0.53	0.0	0.04	12.37	0.00	2.291	4.59	1.06	3.9	96.1	0.0	-1.37	0.68	0.76	1.60	3.6	0.003	0.69	0.0	0.05	13.84	0.00	2.362	4.14	2.34	6.1	93.9	0.0	0.06	0.61	0.72	0.84	1.92	12540	1526	22	0	32	0	0	logfile
✔	8D7R	27231	2024-12-29	2022-06-07	3.9	4.13	3.91	4.0	0.003	0.54	0.0	0.04	15.03	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	4.0	0.004	0.77	0.0	0.05	15.08	0.01	2.422	11.03	2.27	10.3	89.7	0.0	-1.96	0.86	0.64	0.65	1.45	9627	1167	12	0	16	0	0	logfile
✔	8D81	27242	2024-12-28	2022-06-07	3.9	4.14	3.89	4.1	0.004	0.65	0.0	0.05	14.94	0.00	2.266	9.87	1.32	7.1	92.4	0.6	-2.23	0.73	0.74	2.42	4.1	0.003	0.65	0.0	0.04	16.33	0.00	2.428	8.39	1.83	6.4	93.3	0.3	-1.72	0.56	0.76	0.81	1.79	9248	1198	3	0	2	0	0	logfile
✔	8D7Y	27238	2024-12-29	2022-06-07	3.4	3.72	3.45	3.6	0.003	0.58	0.0	0.05	13.76	0.00	2.276	11.11	0.72	6.8	92.6	0.6	-2.04	0.76	0.77	2.82	3.6	0.004	0.59	0.0	0.05	15.04	0.00	2.537	6.39	2.29	7.7	92.3	0.1	-1.91	0.38	0.80	0.83	2.70	10086	1484	3	0	1	0	0	logfile
✔	8D7X	27237	2024-12-29	2022-06-07	3.4	3.65	3.41	3.5	0.006	0.65	1.0	0.05	13.45	0.00	2.219	8.94	0.60	8.6	91.2	0.2	-2.20	0.74	0.76	3.37	3.5	0.004	0.60	0.0	0.05	14.52	0.00	2.596	5.84	3.12	7.5	92.5	0.0	-1.84	0.31	0.83	0.86	2.55	10108	1484	3	0	1	0	0	logfile

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