Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZXE	15009	2024-12-30	2022-05-20	3.5	4.20	3.49	3.6	0.003	0.55	0.0	0.04	19.34	0.00	1.978	8.64	0.00	3.4	96.6	0.0	0.71	0.76	0.76	1.21	3.7	0.003	0.72	0.0	0.04	20.70	0.00	2.430	10.36	1.50	4.4	95.6	0.0	0.74	1.65	0.77	0.81	1.56	14150	1500	11	93	2	0	0	logfile
✔	7ZX8	15007	2024-12-27	2022-05-20	3.0	3.43	3.02	3.0	0.005	0.61	0.0	0.04	17.02	0.00	1.635	8.49	0.15	4.0	96.0	0.0	0.47	0.84	0.80	2.23	3.0	0.004	0.75	0.0	0.04	18.25	0.00	1.948	10.80	1.37	4.0	96.0	0.0	0.40	1.35	0.86	0.85	2.17	49534	5841	32	126	12	0	0	logfile
✔	7ZWA	14995	2024-12-28	2022-05-19	2.8	3.47	2.87	3.3	0.003	0.51	0.0	0.04	16.75	0.00	2.220	7.51	0.00	4.3	95.7	0.0	0.85	0.77	0.85	3.12	3.3	0.005	0.64	0.0	0.04	18.61	0.00	2.456	7.79	1.28	3.5	96.5	0.0	0.80	0.40	0.78	0.87	2.94	9038	1055	6	31	1	0	0	logfile
✔	7XUM	33474	2024-12-27	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.002	0.63	0.0	0.04	16.04	0.00	2.535	7.32	1.63	3.7	96.3	0.0	0.31	0.38	0.56	0.75	0.83	6155	816	2	0	1	0	0	logfile
✔	8CWY	27031	2024-12-26	2022-05-19	3.34	3.58	3.35	3.6	0.002	0.32	0.0	0.03	8.10	0.00	2.026	6.16	0.02	0.8	99.2	0.0	5.71	0.53	0.63	1.88	3.6	0.003	0.42	0.0	0.03	11.92	0.00	2.617	5.20	0.60	0.5	99.5	0.0	6.63	1.16	0.56	0.74	1.24	43620	6300	24	0	0	0	0	logfile
✔	8CX0	27032	2024-12-28	2022-05-19	2.7	3.46	2.59	3.0	0.006	0.70	0.0	0.05	14.18	0.00	2.270	2.23	0.00	3.0	97.0	0.0	0.97	0.87	0.84	3.62	3.0	0.003	0.72	0.0	0.04	15.97	0.01	2.397	7.69	1.25	2.9	97.1	0.0	1.31	2.48	0.88	0.88	3.23	7575	889	8	8	3	0	0	logfile
✔	7XUN	33475	2024-12-27	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.003	0.67	0.0	0.05	15.95	0.00	2.491	10.41	2.94	4.6	95.4	0.0	-0.41	0.45	0.73	0.78	0.38	5591	741	1	0	0	0	0	logfile
✔	7XUR	33477	2024-12-28	2022-05-19	3.49	3.71	3.49	3.6	0.005	0.72	0.0	0.04	19.36	0.00	2.207	10.26	0.00	8.8	91.2	0.0	-2.26	0.77	0.78	2.19	3.6	0.003	0.59	0.0	0.04	20.21	0.00	2.520	7.25	0.55	5.2	94.8	0.0	-1.07	0.36	0.77	0.78	2.07	7749	814	6	48	2	0	0	logfile
✔	8CX2	27034	2024-12-31	2022-05-19	3.2	3.94	3.21	3.2	0.004	0.57	0.0	0.04	15.04	0.00	2.264	4.01	0.00	2.2	97.8	0.0	0.64	0.83	0.76	2.56	3.3	0.003	0.63	0.0	0.04	16.40	0.00	2.500	7.33	1.64	2.7	97.3	0.0	0.90	1.15	0.85	0.82	2.10	15041	1756	16	18	6	0	0	logfile
✔	8CX1	27033	2024-12-31	2022-05-19	3.3	4.00	3.27	2.9	0.004	0.65	0.0	0.04	14.85	0.00	2.244	4.34	0.06	2.7	97.3	0.0	0.14	0.79	0.65	2.34	3.0	0.007	0.78	0.0	0.04	16.37	0.00	2.311	12.44	1.56	3.8	96.2	0.0	0.46	3.57	0.87	0.81	2.16	15184	1781	16	16	6	0	0	logfile
✔	7ZWD	14997	2024-12-27	2022-05-19	3.0	3.30	3.03	3.0	0.005	0.62	0.0	0.04	17.25	0.00	1.559	7.53	0.02	3.3	96.7	0.0	0.25	0.83	0.79	2.29	3.0	0.004	0.76	0.0	0.04	18.60	0.00	2.129	12.14	1.62	3.5	96.5	0.0	0.38	1.38	0.85	0.84	2.04	49279	5789	32	132	12	0	0	logfile
✔	7XU5	33459	2024-12-26	2022-05-18	3.1	3.44	2.94	3.2	0.008	0.76	0.0	0.05	13.70	0.00	2.104	2.92	0.00	3.9	96.1	0.0	-1.17	0.84	0.82	2.48	3.2	0.004	0.49	0.0	0.04	13.64	0.00	2.412	3.41	0.41	3.3	96.7	0.0	-0.38	0.36	0.85	0.85	2.19	44292	2814	12	0	45	0	21549	logfile
✔	8CW4	27023	2024-12-26	2022-05-18	3.0	3.18	3.05	3.1	0.007	0.80	0.0	0.04	28.78	0.03	2.109	6.32	0.00	2.9	97.1	0.0	2.21	0.75	0.87	4.87	3.1	0.002	0.48	0.0	0.04	16.84	0.00	2.562	2.52	0.68	2.1	97.9	0.0	4.23	0.38	0.74	0.88	3.51	39270	4900	135	0	70	0	0	logfile
✔	7XU1	33455	2024-12-28	2022-05-18	3.0	3.16	3.23	3.1	0.012	0.88	1.0	0.07	13.72	0.01	2.068	2.28	0.24	3.9	96.1	0.0	-0.92	0.81	0.82	3.49	3.1	0.003	0.53	1.0	0.05	13.95	0.00	2.382	2.83	0.38	4.1	95.9	0.0	-0.47	0.36	0.83	0.85	3.23	52082	3309	19	0	69	0	25165	logfile
✔	7XU3	33457	2024-12-27	2022-05-18	3.0	3.49	2.94	3.3	0.009	0.88	0.0	0.05	13.99	0.01	1.978	3.82	0.34	3.9	96.1	0.0	-1.43	0.82	0.82	2.61	3.2	0.003	0.57	0.0	0.04	14.22	0.00	2.348	4.34	0.61	4.0	96.0	0.0	-0.29	1.13	0.83	0.84	2.25	47057	3006	15	0	48	0	22838	logfile
✔	8CVR	27013	2024-12-26	2022-05-18	2.7	3.33	2.74	3.1	0.012	1.53	1.0	0.10	12.61	0.00	2.299	16.26	5.28	3.6	95.8	0.6	-1.33	0.87	0.87	3.60	3.1	0.003	0.62	0.0	0.04	15.57	0.00	2.421	5.26	1.80	2.4	97.6	0.0	1.34	1.22	0.85	0.89	3.38	45586	6198	34	0	6	0	0	logfile
✔	8CVN	27010	2024-12-27	2022-05-18	2.4	3.23	2.42	3.1	0.018	1.47	3.0	0.18	18.48	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.003	0.49	0.0	0.04	17.89	0.00	2.608	2.98	2.17	1.4	98.6	0.0	1.88	0.81	0.76	0.87	2.93	4054	512	4	0	4	0	0	logfile
✔	7XU2	33456	2024-12-28	2022-05-18	3.2	3.33	3.13	3.2	0.012	0.95	2.0	0.08	14.46	0.00	2.096	2.07	0.86	5.5	94.5	0.0	-1.37	0.84	0.82	3.25	3.2	0.003	0.55	2.0	0.06	14.06	0.00	2.190	2.20	0.52	4.8	95.2	0.0	-0.60	0.35	0.85	0.85	3.16	52218	3321	18	0	66	0	25248	logfile
✔	7ZW6	14993	2024-12-29	2022-05-18	3.7	3.96	3.76	3.7	0.003	0.53	0.0	0.04	16.90	0.00	1.934	8.56	0.31	2.7	97.3	0.0	2.29	0.78	0.59	0.31	3.7	0.005	0.66	0.0	0.04	18.07	0.00	2.297	58.15	2.93	4.0	96.0	0.0	1.39	1.30	0.84	0.73	0.65	57112	6344	8	0	0	0	6176	logfile
✔	7XUJ	33471	2024-12-29	2022-05-18	2.8	3.15	2.67	3.0	0.010	0.94	0.0	0.06	13.43	0.01	2.262	2.73	1.82	6.7	93.3	0.0	-3.62	0.65	0.86	3.54	3.0	0.003	0.62	0.0	0.04	13.92	0.00	1.853	6.63	1.24	6.7	93.3	0.0	-0.41	0.42	0.66	0.87	3.34	11296	1406	4	0	10	0	0	logfile

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