Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XUJ	33471	2024-12-29	2022-05-18	2.8	3.15	2.67	3.0	0.010	0.94	0.0	0.06	13.43	0.01	2.262	2.73	1.82	6.7	93.3	0.0	-3.62	0.65	0.86	3.54	3.0	0.003	0.62	0.0	0.04	13.92	0.00	1.853	6.63	1.24	6.7	93.3	0.0	-0.41	0.42	0.66	0.87	3.34	11296	1406	4	0	10	0	0	logfile
✔	8CVP	27012	2024-12-29	2022-05-18	3.4	3.75	3.50	3.7	0.003	0.58	0.0	0.04	13.05	0.00	2.231	4.87	0.12	6.1	93.8	0.1	-1.69	0.69	0.74	3.06	3.7	0.003	0.59	0.0	0.05	14.88	0.00	2.544	4.93	2.88	6.2	93.8	0.0	-1.65	0.35	0.76	0.82	3.02	10112	1484	3	0	1	0	0	logfile
✔	7XU2	33456	2024-12-28	2022-05-18	3.2	3.33	3.13	3.2	0.012	0.95	2.0	0.08	14.46	0.00	2.096	2.07	0.86	5.5	94.5	0.0	-1.37	0.84	0.82	3.25	3.2	0.003	0.55	2.0	0.06	14.06	0.00	2.190	2.20	0.52	4.8	95.2	0.0	-0.60	0.35	0.85	0.85	3.16	52218	3321	18	0	66	0	25248	logfile
✔	7XU0	33454	2024-12-28	2022-05-18	2.9	3.11	2.88	3.0	0.012	0.91	0.0	0.05	13.51	0.00	2.095	2.11	0.14	3.1	96.9	0.0	-0.43	0.83	0.84	4.05	3.0	0.003	0.51	0.0	0.04	13.41	0.00	2.416	2.79	0.52	3.3	96.7	0.0	-0.11	0.35	0.84	0.86	3.98	51995	3300	20	0	72	0	25102	logfile
✔	7XU3	33457	2024-12-27	2022-05-18	3.0	3.49	2.94	3.3	0.009	0.88	0.0	0.05	13.99	0.01	1.978	3.82	0.34	3.9	96.1	0.0	-1.43	0.82	0.82	2.61	3.2	0.003	0.57	0.0	0.04	14.22	0.00	2.348	4.34	0.61	4.0	96.0	0.0	-0.29	1.13	0.83	0.84	2.25	47057	3006	15	0	48	0	22838	logfile
✔	7ZW6	14993	2024-12-29	2022-05-18	3.7	3.96	3.76	3.7	0.003	0.53	0.0	0.04	16.90	0.00	1.934	8.56	0.31	2.7	97.3	0.0	2.29	0.78	0.59	0.31	3.7	0.005	0.66	0.0	0.04	18.07	0.00	2.297	58.15	2.93	4.0	96.0	0.0	1.39	1.30	0.84	0.73	0.65	57112	6344	8	0	0	0	6176	logfile
✔	8CVN	27010	2024-12-27	2022-05-18	2.4	3.23	2.42	3.1	0.018	1.47	3.0	0.18	18.48	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.003	0.49	0.0	0.04	17.89	0.00	2.608	2.98	2.17	1.4	98.6	0.0	1.88	0.81	0.76	0.87	2.93	4054	512	4	0	4	0	0	logfile
✔	8CW4	27023	2024-12-26	2022-05-18	3.0	3.18	3.05	3.1	0.007	0.80	0.0	0.04	28.78	0.03	2.109	6.32	0.00	2.9	97.1	0.0	2.21	0.75	0.87	4.87	3.1	0.002	0.48	0.0	0.04	16.84	0.00	2.562	2.52	0.68	2.1	97.9	0.0	4.23	0.38	0.74	0.88	3.51	39270	4900	135	0	70	0	0	logfile
✔	8CVi	27008	2024-12-31	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.003	0.61	0.0	0.04	16.49	0.00	2.305	8.26	1.93	4.0	96.0	0.0	3.46	2.20	0.58	0.85	0.95	66030	8856	33	0	0	0	0	logfile
✔	7XTQ	33452	2024-12-28	2022-05-17	3.2	2.29	3.30	2.1	0.004	0.75	0.0	0.05	12.54	0.01	2.192	5.84	0.00	3.1	96.9	0.0	-0.37	0.73	0.74	2.67	2.1	0.003	0.66	0.0	0.04	15.41	0.00	2.387	4.40	2.25	3.4	96.6	0.0	0.72	0.37	0.74	0.76	1.95	8010	1027	6	0	1	0	0	logfile
✔	7XTG	33448	2024-12-31	2022-05-17	2.2	2.41	2.26	2.5	0.004	0.76	0.0	0.04	18.20	0.01	2.094	13.57	2.55	4.4	95.4	0.1	-0.48	0.60	0.72	1.71	2.4	0.003	0.65	0.0	0.04	17.27	0.00	2.446	6.93	2.74	3.7	96.1	0.1	1.99	1.22	0.68	0.89	3.10	15435	2034	15	0	3	0	0	logfile
✔	8CUi	27000	2024-12-28	2022-05-17	2.55	2.73	2.53	2.8	0.003	0.53	0.0	0.04	15.72	0.00	2.264	4.77	0.00	1.7	98.3	0.0	1.71	0.63	0.85	3.07	2.8	0.002	0.54	0.0	0.04	16.19	0.00	2.573	4.46	1.76	1.7	98.3	0.0	1.83	0.23	0.61	0.84	2.93	9357	1230	3	0	0	0	0	logfile
✔	8CUA	26997	2024-12-29	2022-05-17	2.44	2.61	2.45	2.8	0.003	0.58	0.0	0.04	15.57	0.00	1.957	4.39	0.00	1.8	98.2	0.0	2.01	0.64	0.83	1.77	2.8	0.003	0.52	0.0	0.04	16.21	0.00	2.620	3.37	1.34	1.3	98.7	0.0	2.39	0.31	0.62	0.84	1.70	9534	1248	9	0	6	30	0	logfile
✔	7ZW1	14991	2024-12-30	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	4.0	0.002	0.50	0.0	0.04	17.45	0.00	2.450	4.74	1.89	3.4	96.6	0.0	3.09	0.72	0.65	0.80	1.33	11807	760	3	0	0	0	5883	logfile
✔	8CV2	27006	2024-12-29	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.8	0.003	0.53	0.0	0.04	15.00	0.00	2.238	4.08	1.75	0.8	99.2	0.0	2.92	0.23	0.61	0.84	1.64	9882	1299	6	0	6	0	0	logfile
✔	7ZVT	14986	2024-12-28	2022-05-17	2.74	3.38	2.78	3.2	0.004	0.57	0.0	0.04	19.19	0.00	2.192	7.49	2.94	1.6	98.4	0.0	1.55	0.83	0.89	3.04	3.2	0.003	0.62	0.0	0.04	19.23	0.00	2.460	6.40	1.52	1.8	98.2	0.0	1.45	0.70	0.82	0.90	2.90	8842	1022	5	30	1	0	0	logfile
✔	7XTK	33451	2024-12-27	2022-05-17	2.89	3.27	2.92	3.2	0.004	0.87	0.0	0.04	13.37	0.01	1.873	9.37	0.00	6.4	92.3	1.3	-1.05	0.59	0.83	2.77	3.2	0.004	0.68	0.0	0.04	15.06	0.01	2.569	7.81	1.18	7.9	91.6	0.5	0.71	1.73	0.57	0.84	2.06	3159	395	1	0	0	0	0	logfile
✔	8CUJ	27001	2024-12-27	2022-05-17	3.04	2.55	3.04	3.2	0.002	0.53	0.0	0.04	14.73	0.00	2.276	5.90	0.00	2.1	97.9	0.0	1.48	0.44	0.80	0.86	3.1	0.003	0.55	0.0	0.04	15.75	0.00	2.627	5.46	3.60	2.1	97.9	0.0	1.57	0.89	0.44	0.80	1.70	3293	433	2	0	0	1	0	logfile
✔	8CV3	27007	2024-12-27	2022-05-17	3.04	2.73	2.97	3.0	0.003	0.51	0.0	0.04	14.07	0.00	2.310	2.76	0.00	2.9	97.1	0.0	1.93	0.52	0.84	2.06	3.1	0.003	0.53	0.0	0.04	14.72	0.00	2.228	3.37	2.02	2.2	97.8	0.0	2.58	0.88	0.49	0.84	2.48	3168	416	2	0	2	0	0	logfile
✔	8CUD	26998	2024-12-27	2022-05-17	2.94	2.75	2.95	2.8	0.005	0.67	0.0	0.05	15.61	0.00	2.433	3.10	0.00	1.9	98.1	0.0	1.42	0.49	0.83	1.26	2.8	0.003	0.56	0.0	0.04	16.89	0.00	2.579	5.46	2.77	1.4	98.6	0.0	1.59	0.93	0.48	0.84	1.71	3294	433	2	0	0	2	0	logfile

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