Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CSX	26974	2024-12-28	2022-05-13	2.4	2.08	2.44	2.1	0.006	0.79	1.0	0.05	15.46	0.01	2.208	4.92	3.86	1.7	98.2	0.1	1.76	0.69	0.88	5.16	2.1	0.005	0.66	0.0	0.04	15.22	0.00	2.535	6.41	3.11	1.9	98.1	0.0	2.15	0.35	0.69	0.88	4.73	9116	1158	8	0	4	150	0	logfile
✔	8CSY	26975	2024-12-27	2022-05-13	2.7	2.51	2.69	2.6	0.003	0.56	0.0	0.04	14.36	0.00	2.224	4.67	4.06	1.6	98.4	0.0	1.07	0.63	0.86	4.96	2.6	0.003	0.54	0.0	0.04	17.34	0.00	2.638	4.67	3.45	1.7	98.3	0.0	1.01	0.47	0.63	0.87	4.33	4638	584	4	0	0	19	0	logfile
✔	8CT6	26983	2024-12-31	2022-05-13	3.1	3.35	3.17	3.2	0.004	0.64	0.0	0.05	17.17	0.00	2.240	12.75	1.00	2.8	97.2	0.0	0.03	0.79	0.84	2.39	3.2	0.004	0.78	1.0	0.04	16.25	0.00	2.022	10.79	3.54	2.5	97.5	0.1	0.33	1.10	0.79	0.85	2.30	14918	1857	14	0	23	0	0	logfile
✔	7XS7	33423	2024-12-30	2022-05-13	3.2	3.43	3.32	3.4	0.004	0.71	0.0	0.04	14.80	0.00	1.946	3.69	0.16	4.2	95.6	0.3	-2.73	0.69	0.86	3.61	3.4	0.003	0.54	0.0	0.04	15.70	0.00	2.459	1.88	1.32	4.5	95.4	0.1	0.10	0.36	0.67	0.87	2.99	12270	1458	4	0	42	0	0	logfile
✔	8CTC	26985	2024-12-28	2022-05-13	2.8	2.97	2.80	3.2	0.005	0.74	0.0	0.05	14.01	0.00	1.917	4.18	0.00	3.0	97.0	0.0	0.39	0.60	0.80	1.61	3.2	0.003	0.56	0.0	0.04	15.63	0.00	2.177	5.07	3.06	2.9	97.1	0.0	1.29	1.16	0.55	0.79	1.78	9309	1221	12	0	12	12	0	logfile
✔	7XS6	33422	2024-12-30	2022-05-12	2.9	3.04	2.79	3.0	0.009	0.82	0.0	0.04	15.46	0.00	2.112	6.80	0.61	5.3	94.5	0.2	-1.32	0.69	0.85	3.57	3.0	0.003	0.53	0.0	0.04	16.10	0.00	2.447	5.26	1.37	3.7	96.3	0.0	1.06	0.40	0.66	0.86	2.82	12440	1458	4	0	44	0	0	logfile
✔	7V0X	26952	2024-12-27	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.004	0.57	0.0	0.04	18.68	0.00	2.620	7.40	3.03	4.6	95.4	0.0	1.73	0.46	0.60	0.88	3.11	2818	375	1	0	0	0	0	logfile
✔	7V0T	26950	2024-12-27	2022-05-11	2.7	2.57	2.75	2.6	0.004	0.63	0.0	0.04	19.43	0.00	2.151	6.08	3.45	1.6	98.3	0.2	0.57	0.58	0.85	3.41	2.6	0.003	0.57	0.0	0.04	19.55	0.00	2.600	5.65	3.65	2.1	97.9	0.0	1.13	0.35	0.57	0.86	3.23	4658	584	4	0	0	39	0	logfile
✔	7V0U	26951	2024-12-27	2022-05-11	3.0	2.84	2.93	2.9	0.005	0.75	0.0	0.05	20.37	0.01	2.232	7.29	2.50	1.5	98.5	0.0	0.61	0.64	0.86	3.90	2.9	0.005	0.63	0.0	0.04	20.61	0.00	2.602	8.30	3.33	2.7	97.3	0.0	0.90	0.58	0.62	0.87	3.74	4453	558	3	0	0	2	0	logfile
✔	7XRP	33416	2024-12-27	2022-05-11	3.88	4.07	3.83	4.0	0.008	1.14	0.0	0.08	14.36	0.02	2.261	4.57	0.45	8.4	91.6	0.0	-4.63	0.53	0.80	2.30	4.0	0.003	0.72	0.0	0.04	16.04	0.00	2.560	9.64	2.93	6.2	93.8	0.0	-3.07	0.69	0.53	0.79	1.77	4129	515	5	0	4	0	0	logfile
✔	7V0Y	26953	2024-12-27	2022-05-11	3.0	2.81	2.91	2.9	0.003	0.63	0.0	0.04	19.40	0.00	2.203	5.27	1.46	1.5	98.5	0.0	0.80	0.62	0.85	3.45	2.9	0.003	0.57	0.0	0.04	19.57	0.00	2.536	7.40	3.12	1.6	98.4	0.0	1.18	0.37	0.60	0.86	3.26	4454	558	3	0	0	1	0	logfile
✔	7V0Q	26948	2024-12-27	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.52	0.0	0.04	18.63	0.00	2.627	3.38	3.22	1.2	98.8	0.0	1.92	0.25	0.59	0.88	5.59	5301	658	2	0	0	127	0	logfile
✔	7V0M	26944	2024-12-27	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.47	0.0	0.04	18.13	0.00	2.636	4.51	1.81	3.8	96.2	0.0	2.08	0.48	0.55	0.88	4.37	3724	483	4	0	0	60	0	logfile
✔	7XRD	33414	2024-12-27	2022-05-10	3.9	3.64	—	3.6	0.002	0.57	0.0	0.04	14.12	0.00	2.012	1.57	0.52	2.0	98.0	0.0	-0.70	0.42	0.75	2.59	3.7	0.003	0.73	0.0	0.05	17.20	0.00	2.015	8.01	1.74	4.0	96.0	0.0	0.41	1.40	0.42	0.77	2.14	5460	656	8	0	8	0	0	logfile
✔	7ZTH	14960	2024-12-28	2022-05-10	4.0	4.19	3.99	4.1	0.009	1.07	0.0	0.06	23.04	0.01	2.244	6.78	1.24	10.0	90.0	0.0	-5.31	0.71	0.76	—	4.1	0.003	0.67	0.0	0.04	22.86	0.00	2.495	7.89	3.11	6.9	93.1	0.0	-2.53	0.53	0.71	0.75	—	7620	722	4	82	0	0	0	logfile
✔	7XR4	33407	2024-12-29	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	15.58	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.002	0.52	0.0	0.04	14.83	0.00	2.555	9.67	1.24	0.9	99.1	0.0	3.22	0.37	0.70	0.85	1.46	10026	1278	9	0	27	0	0	logfile
✔	7UZY	26922	2024-12-31	2022-05-09	4.05	5.04	4.10	3.8	0.005	0.76	0.0	0.05	13.95	0.01	1.373	14.50	0.38	4.7	95.2	0.1	-0.62	0.77	0.63	—	3.8	0.003	0.66	0.0	0.04	15.34	0.00	2.339	13.44	0.00	3.4	96.6	0.0	-0.12	1.25	0.83	0.74	—	15332	1781	11	44	0	0	0	logfile
✔	7UZV	26919	2024-12-28	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.003	0.59	0.0	0.04	18.92	0.00	2.391	4.45	2.84	2.1	97.7	0.2	1.02	0.28	0.61	0.85	3.79	9274	584	4	0	0	63	4592	logfile
✔	7UZS	26917	2024-12-29	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.53	0.0	0.04	17.96	0.00	2.457	2.32	0.89	0.8	99.2	0.0	1.35	0.32	0.64	0.87	6.39	10550	658	2	0	0	193	5183	logfile
✔	7ZT6	14955	2024-12-28	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.003	0.63	0.0	0.04	14.39	0.00	2.463	8.77	0.70	2.2	97.8	0.0	0.79	0.74	0.93	0.88	1.89	8073	1031	3	0	1	0	0	logfile

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