Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UZW	26920	2024-12-31	2022-05-09	3.55	4.43	3.43	3.7	0.006	0.77	0.0	0.05	14.77	0.00	1.945	10.42	0.06	6.8	93.2	0.1	-0.88	0.84	0.75	1.73	3.7	0.004	0.70	0.0	0.04	16.89	0.00	2.422	10.22	1.81	5.0	95.0	0.0	0.23	1.49	0.90	0.85	1.54	14754	1760	8	31	0	0	0	logfile
✔	7UZY	26922	2024-12-31	2022-05-09	4.05	5.04	4.10	3.8	0.005	0.76	0.0	0.05	13.95	0.01	1.373	14.50	0.38	4.7	95.2	0.1	-0.62	0.77	0.63	—	3.8	0.003	0.66	0.0	0.04	15.34	0.00	2.339	13.44	0.00	3.4	96.6	0.0	-0.12	1.25	0.83	0.74	—	15332	1781	11	44	0	0	0	logfile
✔	7ZT6	14955	2024-12-28	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.003	0.63	0.0	0.04	14.39	0.00	2.463	8.77	0.70	2.2	97.8	0.0	0.79	0.74	0.93	0.88	1.89	8073	1031	3	0	1	0	0	logfile
✔	7UZU	26918	2024-12-28	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.50	0.0	0.04	17.61	0.00	2.409	2.73	0.78	3.8	96.2	0.0	2.45	0.19	0.59	0.87	5.46	7399	483	4	0	0	79	3655	logfile
✔	7UZS	26917	2024-12-29	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.53	0.0	0.04	17.96	0.00	2.457	2.32	0.89	0.8	99.2	0.0	1.35	0.32	0.64	0.87	6.39	10550	658	2	0	0	193	5183	logfile
✔	7UZV	26919	2024-12-28	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.003	0.59	0.0	0.04	18.92	0.00	2.391	4.45	2.84	2.1	97.7	0.2	1.02	0.28	0.61	0.85	3.79	9274	584	4	0	0	63	4592	logfile
✔	7UZB	26885	2024-12-28	2022-05-08	4.1	4.79	4.12	4.2	0.003	0.60	0.0	0.04	14.48	0.00	2.037	14.67	0.00	3.6	96.4	0.0	0.43	0.90	0.81	—	4.2	0.003	0.59	0.0	0.04	12.76	0.00	2.501	10.41	0.00	3.4	96.6	0.0	0.12	0.94	0.90	0.81	—	8392	1077	4	0	4	0	0	logfile
✔	7XQi	33397	2024-12-29	2022-05-07	3.7	4.27	3.41	4.0	0.006	0.72	0.0	0.04	14.16	0.00	2.030	5.68	2.27	2.1	97.9	0.0	-2.27	0.76	0.86	3.63	4.0	0.003	0.64	0.0	0.04	15.87	0.00	2.469	4.07	1.70	4.4	95.6	0.0	2.42	1.07	0.77	0.86	3.44	9582	1176	6	0	0	0	0	logfile
✔	7XQG	33395	2024-12-29	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	12.11	0.00	2.030	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.72	0.0	0.04	15.50	0.00	2.456	5.94	3.33	3.7	96.3	0.0	2.39	0.72	0.80	0.86	1.90	10206	1206	12	0	12	0	0	logfile
✔	7XQJ	33398	2024-12-29	2022-05-07	4.0	4.56	3.73	4.2	0.007	0.84	0.0	0.05	15.98	0.01	2.026	6.40	6.01	6.5	93.5	0.0	-2.82	0.78	0.85	—	4.3	0.003	0.77	0.0	0.04	16.55	0.00	2.432	8.66	2.46	3.0	97.0	0.0	1.46	0.73	0.78	0.85	—	9960	1224	6	0	0	0	0	logfile
✔	7XQB	33392	2024-12-27	2022-05-07	3.0	3.07	2.98	3.1	0.006	1.12	0.0	0.04	18.74	0.00	2.280	2.77	1.10	2.0	98.0	0.0	2.22	0.66	0.87	3.09	3.1	0.004	0.61	0.0	0.04	16.05	0.00	2.405	7.23	0.87	4.1	95.9	0.0	2.05	0.84	0.67	0.88	2.86	42852	2424	24	0	168	0	20040	logfile
✔	7XQD	33393	2024-12-27	2022-05-07	2.7	3.09	2.64	2.9	0.006	1.17	0.0	0.04	17.82	0.00	2.067	3.24	0.56	2.0	98.0	0.0	3.53	0.63	0.87	4.27	2.9	0.002	0.54	0.0	0.03	14.94	0.00	2.391	6.37	1.30	2.6	97.4	0.0	3.46	1.16	0.64	0.88	3.97	42980	2412	36	0	156	272	19968	logfile
✔	7XQH	33396	2024-12-29	2022-05-07	3.8	4.45	3.57	4.2	0.005	0.78	0.0	0.04	15.53	0.01	2.030	5.28	2.23	3.6	95.9	0.5	-2.01	0.77	0.84	2.84	4.2	0.002	0.66	0.0	0.04	17.02	0.00	2.520	6.54	3.82	2.0	97.7	0.3	2.47	1.48	0.77	0.85	2.33	9774	1200	6	0	0	0	0	logfile
✔	7XQF	33394	2024-12-27	2022-05-07	2.3	2.69	2.25	2.6	0.005	1.09	0.0	0.04	17.01	0.00	1.942	3.87	0.56	1.6	98.4	0.0	3.06	0.68	0.87	4.51	2.6	0.003	0.54	0.0	0.04	14.68	0.00	2.476	3.41	1.06	2.3	97.7	0.0	3.15	1.04	0.65	0.88	4.39	43140	2412	36	0	168	492	19968	logfile
✔	7XQ8	33390	2024-12-30	2022-05-07	3.3	3.57	3.29	3.5	0.005	0.76	0.0	0.13	14.24	0.01	1.664	13.03	1.23	6.5	92.9	0.6	-1.08	0.61	0.66	2.30	3.5	0.012	0.98	0.0	0.06	15.42	0.01	2.364	10.17	4.25	8.3	91.1	0.6	-1.12	1.15	0.67	0.79	2.14	12452	1889	10	0	14	0	0	logfile
✔	7XQ0	33387	2024-12-27	2022-05-06	3.0	2.77	3.09	3.2	0.014	1.26	0.0	0.06	13.01	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	0.64	0.0	0.04	14.16	0.00	2.589	6.59	1.73	1.0	99.0	0.0	1.27	1.11	0.46	0.80	3.17	3320	402	2	0	2	0	0	logfile
✔	7XPZ	33386	2024-12-27	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.003	0.66	0.0	0.04	14.17	0.00	2.571	5.96	2.31	4.8	95.2	0.0	-0.96	1.15	0.45	0.77	2.31	3227	402	1	0	0	0	0	logfile
✔	7UY7	26866	2024-12-31	2022-05-06	4.2	4.18	4.04	3.2	0.002	0.56	1.0	0.04	15.12	0.00	2.203	13.96	0.18	3.8	96.2	0.0	-0.53	0.73	0.74	—	3.2	0.003	0.62	0.0	0.04	15.65	0.00	2.458	12.05	0.00	4.2	95.8	0.0	-0.75	1.24	0.73	0.76	—	15161	1808	7	10	1	0	0	logfile
✔	7XPX	33385	2024-12-30	2022-05-06	3.2	3.32	3.18	3.3	0.004	0.61	0.0	0.04	27.53	0.00	2.185	10.26	0.00	3.6	96.4	0.0	0.82	0.67	0.79	2.86	3.3	0.004	0.55	0.0	0.03	27.32	0.00	2.529	8.30	1.79	3.0	97.0	0.0	1.95	1.07	0.57	0.78	2.34	13408	934	12	290	1	0	0	logfile
✔	7UY8	26867	2024-12-29	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.66	0.0	0.04	14.49	0.00	2.424	11.61	0.00	4.9	95.1	0.0	-0.37	1.40	0.92	0.84	—	9552	1161	5	0	1	0	0	logfile

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