Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XPX	33385	2024-12-30	2022-05-06	3.2	3.32	3.18	3.3	0.004	0.61	0.0	0.04	27.53	0.00	2.185	10.26	0.00	3.6	96.4	0.0	0.82	0.67	0.79	2.86	3.3	0.004	0.55	0.0	0.03	27.32	0.00	2.529	8.30	1.79	3.0	97.0	0.0	1.95	1.07	0.57	0.78	2.34	13408	934	12	290	1	0	0	logfile
✔	7ZSD	14930	2024-12-27	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	17.98	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.69	0.0	0.05	15.93	0.00	2.500	9.34	3.59	7.4	92.6	0.0	-0.39	0.41	0.38	0.77	1.57	2120	261	3	0	2	0	0	logfile
✔	7UXU	26862	2024-12-28	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	17.35	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.003	0.56	0.0	0.04	17.33	0.00	2.547	0.57	0.41	2.1	97.9	0.0	0.80	1.30	0.54	0.86	4.02	8776	536	8	0	4	0	4268	logfile
✔	7UXE	26858	2024-12-28	2022-05-05	3.38	3.63	3.46	3.9	0.005	0.86	0.0	0.04	19.49	0.01	2.026	14.38	2.00	14.2	85.8	0.0	-2.79	0.58	0.77	1.31	3.9	0.003	0.74	0.0	0.04	18.54	0.00	2.432	7.64	1.60	12.0	88.0	0.0	-0.03	1.22	0.55	0.76	1.26	9480	1150	10	0	0	0	0	logfile
✔	7UXA	26856	2024-12-28	2022-05-05	3.28	3.56	3.32	3.5	0.003	0.58	0.0	0.04	16.77	0.00	2.084	7.47	0.88	5.2	94.8	0.0	-0.97	0.78	0.82	2.37	3.5	0.003	0.55	0.0	0.04	18.18	0.00	2.063	7.66	1.17	4.3	95.7	0.0	0.27	0.55	0.78	0.81	1.71	8120	820	6	78	2	0	0	logfile
✔	7UX2	26846	2024-12-29	2022-05-04	2.9	3.04	—	3.0	0.003	0.64	0.0	0.04	14.24	0.00	1.999	4.45	0.00	5.1	94.9	0.0	0.24	0.74	0.78	3.35	3.0	0.003	0.59	0.0	0.04	16.59	0.00	1.881	5.07	1.33	5.2	94.8	0.0	0.36	0.48	0.73	0.82	2.96	54416	3421	20	2	4	0	27167	logfile
✔	7ZRK	14917	2024-12-29	2022-05-04	3.1	2.68	3.17	3.0	0.005	0.77	0.0	0.05	16.23	0.01	2.251	6.83	0.00	4.5	95.5	0.0	-0.25	0.63	0.81	2.05	3.0	0.003	0.56	0.0	0.04	16.46	0.00	2.430	8.08	0.88	3.3	96.7	0.0	1.27	0.28	0.63	0.83	1.97	11050	1450	6	0	15	0	0	logfile
✔	7ZRi	14915	2024-12-30	2022-05-04	3.5	3.62	3.50	3.6	0.006	0.92	0.0	0.05	16.16	0.01	2.196	7.56	0.00	4.6	95.4	0.0	-1.22	0.70	0.82	1.47	3.6	0.003	0.57	0.0	0.04	16.36	0.00	2.504	9.65	1.67	4.2	95.8	0.0	0.60	0.27	0.70	0.83	1.35	11014	1450	6	0	9	0	0	logfile
✔	7ZRM	14919	2024-12-29	2022-05-04	3.7	3.18	3.69	3.5	0.004	0.81	0.0	0.05	14.87	0.01	2.260	7.18	0.00	5.1	94.9	0.0	-1.35	0.64	0.79	0.91	3.5	0.004	0.61	0.0	0.04	16.56	0.00	2.450	9.40	1.50	4.5	95.5	0.0	0.21	1.06	0.64	0.81	0.91	10839	1450	6	0	7	0	0	logfile
✔	7ZRE	14912	2024-12-29	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	16.34	0.01	2.231	7.35	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.3	0.003	0.61	0.0	0.04	16.68	0.00	2.448	9.89	1.06	3.8	96.2	0.0	0.58	0.29	0.62	0.81	2.34	10996	1447	6	0	11	0	0	logfile
✔	7ZRL	14918	2024-12-29	2022-05-04	4.0	3.62	3.94	3.9	0.005	0.91	0.0	0.05	14.30	0.01	2.197	9.04	0.00	5.0	95.0	0.0	-1.26	0.66	0.79	—	3.9	0.003	0.71	0.0	0.04	16.32	0.00	2.517	13.10	2.12	5.3	94.6	0.1	0.44	0.41	0.67	0.81	—	10782	1447	5	0	1	0	0	logfile
✔	7ZRH	14914	2024-12-29	2022-05-04	3.4	3.53	3.41	3.5	0.004	0.75	0.0	0.05	15.89	0.01	2.242	6.63	0.00	4.2	95.8	0.0	-1.07	0.71	0.83	2.05	3.5	0.003	0.56	0.0	0.04	15.83	0.00	2.482	9.03	0.97	3.7	96.3	0.0	0.51	1.47	0.71	0.86	1.60	11014	1450	6	0	9	0	0	logfile
✔	7ZRD	14911	2024-12-30	2022-05-04	3.3	3.45	3.22	3.4	0.004	0.81	0.0	0.05	16.19	0.01	2.272	5.42	0.00	4.1	95.9	0.0	-0.83	0.70	0.84	1.89	3.4	0.003	0.52	0.0	0.04	16.06	0.00	2.520	7.73	1.58	3.3	96.7	0.0	1.45	0.32	0.69	0.85	1.81	11037	1452	6	0	12	0	0	logfile
✔	7ZRG	14913	2024-12-29	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.91	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.003	0.56	0.0	0.04	16.88	0.00	2.412	8.27	1.68	4.0	96.0	0.0	0.65	0.31	0.64	0.81	1.16	11032	1448	6	0	10	0	0	logfile
✔	7ZR8	14886	2024-12-27	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.60	0.0	0.04	13.18	0.00	2.324	7.84	4.21	5.4	94.6	0.0	-1.04	0.49	0.72	0.82	2.00	3693	471	4	0	1	0	0	logfile
✔	7XP6	33366	2024-12-28	2022-05-03	3.01	2.40	3.14	2.1	0.003	0.59	0.0	0.04	13.31	0.01	2.100	7.69	0.00	2.6	97.4	0.0	1.78	0.74	0.75	2.85	2.1	0.003	0.58	0.0	0.04	14.83	0.00	2.494	6.43	2.86	2.6	97.3	0.1	1.70	1.12	0.76	0.79	2.58	8336	1051	6	0	1	0	0	logfile
✔	7UWF	26831	2024-12-30	2022-05-03	2.7	2.78	2.77	2.7	0.004	0.62	0.0	0.04	12.06	0.01	2.127	6.27	0.00	3.0	97.0	0.0	1.46	0.77	0.82	2.47	2.7	0.003	0.61	0.0	0.04	15.51	0.00	2.504	6.61	1.46	3.0	97.0	0.0	2.07	0.38	0.78	0.84	2.60	13174	1760	4	0	0	0	0	logfile
✔	7UWC	26828	2024-12-26	2022-05-03	4.0	4.38	4.18	2.5	0.005	0.70	1.0	0.05	10.20	0.00	2.216	5.60	0.50	5.0	94.8	0.2	1.98	0.76	0.74	—	2.3	0.003	0.59	0.0	0.04	11.43	0.00	2.306	6.37	1.34	5.2	94.7	0.1	1.97	0.38	0.81	0.83	—	46123	7764	31	0	56	0	0	logfile
✔	7ZR0	14875	2024-12-30	2022-05-03	3.4	2.38	3.28	2.2	0.007	1.00	0.0	0.05	19.99	0.01	2.011	10.56	0.19	10.1	89.3	0.6	-2.37	0.78	0.78	1.91	2.2	0.004	1.06	1.0	0.05	20.04	0.00	1.678	6.51	4.51	10.1	89.5	0.4	-1.33	0.94	0.76	0.78	1.94	14052	1716	6	0	2	0	0	logfile
✔	7UWJ	26833	2024-12-27	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.20	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.004	0.71	0.0	0.04	14.88	0.01	2.522	9.43	3.34	6.1	93.9	0.0	-2.25	0.46	0.68	0.65	1.93	5314	664	6	0	6	0	0	logfile

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