Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UWL	26835	2024-12-29	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.004	0.80	0.0	0.05	16.71	0.00	2.432	12.38	4.15	7.6	92.4	0.0	-1.56	0.41	0.69	0.65	1.65	10100	1236	16	0	22	0	0	logfile
✔	7UW9	26825	2024-12-26	2022-05-03	4.2	4.40	4.30	2.2	0.003	0.62	2.0	0.04	10.30	0.00	2.207	7.60	1.21	3.9	96.0	0.1	2.14	0.79	0.78	—	2.1	0.003	0.56	0.0	0.04	10.17	0.00	2.406	6.90	0.00	4.8	95.2	0.1	2.08	1.68	0.80	0.79	—	46156	7764	31	0	56	0	0	logfile
✔	7XP5	33365	2024-12-28	2022-05-03	3.08	2.39	3.13	2.1	0.004	0.59	0.0	0.04	12.66	0.00	2.198	8.66	0.00	3.1	96.9	0.0	1.69	0.74	0.75	2.94	2.1	0.004	0.91	0.0	0.04	15.39	0.00	2.459	8.36	2.07	2.6	97.4	0.0	1.55	1.10	0.74	0.76	2.01	8381	1059	5	0	0	0	0	logfile
✔	7UWK	26834	2024-12-31	2022-05-03	4.4	3.30	4.35	2.2	0.004	0.80	0.0	0.05	12.35	0.01	2.131	18.13	0.11	5.0	95.0	0.0	-1.76	0.66	0.54	—	2.3	0.003	0.76	0.0	0.05	12.79	0.01	2.497	14.22	0.06	7.0	93.0	0.0	-1.76	1.87	0.66	0.57	—	16064	2059	12	0	0	0	0	logfile
✔	7UWN	26837	2024-12-29	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.004	0.65	0.0	0.04	16.57	0.00	2.493	9.96	4.34	5.3	94.7	0.0	-1.03	0.31	0.66	0.63	0.78	10602	1325	12	0	11	0	0	logfile
✔	7UWM	26836	2024-12-28	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	17.88	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.003	0.58	0.0	0.04	17.70	0.00	2.516	5.58	3.18	2.3	97.7	0.0	-0.62	0.24	0.80	0.79	2.26	7972	967	9	0	9	0	0	logfile
✔	7ZR8	14886	2024-12-27	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.60	0.0	0.04	13.18	0.00	2.324	7.84	4.21	5.4	94.6	0.0	-1.04	0.49	0.72	0.82	2.00	3693	471	4	0	1	0	0	logfile
✔	7UWJ	26833	2024-12-27	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.20	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.004	0.71	0.0	0.04	14.88	0.01	2.522	9.43	3.34	6.1	93.9	0.0	-2.25	0.46	0.68	0.65	1.93	5314	664	6	0	6	0	0	logfile
✔	7UWD	26829	2024-12-26	2022-05-03	4.1	4.40	4.24	2.3	0.006	0.78	1.0	0.05	10.38	0.00	2.218	5.49	1.17	5.1	94.7	0.2	1.93	0.77	0.74	—	2.1	0.003	0.56	0.0	0.04	9.94	0.00	2.388	5.76	0.00	5.1	94.9	0.1	2.20	0.39	0.83	0.85	—	46162	7772	31	0	56	0	0	logfile
✔	7UVT	26816	2024-12-30	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.87	0.01	2.091	16.76	0.00	0.0	0.0	0.0	—	0.48	0.78	0.78	—	12409	0	1	386	0	0	4149	logfile
✔	7ZQS	14874	2024-12-29	2022-05-02	2.54	3.28	2.59	3.0	0.004	0.57	0.0	0.04	18.00	0.00	2.257	5.71	0.00	2.4	97.6	0.0	1.32	0.88	0.91	5.01	3.0	0.004	0.54	0.0	0.04	18.36	0.00	2.152	5.21	0.00	2.0	98.0	0.0	1.78	0.20	0.86	0.90	4.17	11354	1278	12	60	14	0	0	logfile
✔	7UVP	26815	2024-12-27	2022-05-02	3.7	3.39	3.39	3.5	0.002	0.51	0.0	0.04	15.71	0.00	1.942	7.42	0.00	5.0	95.0	0.0	-1.10	0.61	0.77	2.40	3.5	0.004	0.62	0.0	0.05	17.63	0.00	1.840	9.54	3.75	5.0	95.0	0.0	-0.77	1.13	0.61	0.77	2.60	5671	718	2	0	2	1	0	logfile
✔	7UVK	26812	2024-12-29	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.003	0.67	0.0	0.04	16.07	0.00	2.533	9.61	3.75	8.6	91.4	0.0	-2.24	0.71	0.70	0.87	2.87	10350	1295	1	0	0	0	0	logfile
✔	7UVL	26813	2024-12-31	2022-05-02	3.56	4.29	3.57	3.8	0.003	0.56	0.0	0.04	12.92	0.00	2.161	13.72	0.00	5.2	94.8	0.0	-0.68	0.90	0.82	1.57	3.8	0.004	0.63	0.0	0.04	14.88	0.00	2.509	12.98	1.40	6.4	93.6	0.0	-0.68	0.88	0.91	0.85	1.06	16508	2154	5	0	0	0	0	logfile
✔	7XoL	33351	2024-12-28	2022-05-01	3.26	4.02	3.37	3.4	0.002	0.49	0.0	0.04	13.50	0.00	2.224	10.95	0.00	0.5	99.5	0.0	2.40	0.89	0.88	1.73	3.4	0.003	0.54	0.0	0.04	14.94	0.00	2.280	9.29	1.26	1.0	99.0	0.0	2.21	0.28	0.90	0.90	1.65	53970	7336	14	0	0	0	0	logfile
✔	7Xo9	33341	2024-12-27	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.06	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	2.0	0.004	0.67	0.0	0.04	17.20	0.00	2.041	7.73	1.87	3.2	96.8	0.0	0.21	0.65	0.76	0.80	2.77	6483	793	3	0	5	0	0	logfile
✔	7XoM	33352	2024-12-28	2022-05-01	3.2	3.57	3.19	3.2	0.002	0.49	0.0	0.04	13.30	0.00	2.175	10.99	0.02	0.9	99.1	0.0	2.16	0.87	0.86	1.74	3.3	0.003	0.55	0.0	0.04	15.29	0.00	2.354	9.68	1.33	1.0	99.0	0.0	2.05	0.94	0.88	0.88	1.58	54129	7336	15	0	32	0	0	logfile
✔	7XoV	33360	2024-12-28	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.005	0.98	0.0	0.05	15.45	0.01	2.542	12.22	2.02	4.1	95.7	0.2	-0.03	1.64	0.52	0.67	1.19	8218	1036	6	0	1	1	0	logfile
✔	7XoJ	33349	2024-12-28	2022-05-01	2.8	3.84	2.82	3.2	0.003	0.48	0.0	0.04	13.28	0.00	2.189	10.04	0.00	0.9	99.1	0.0	2.28	0.88	0.87	2.08	3.2	0.003	0.57	0.0	0.04	14.90	0.00	2.470	9.29	0.65	0.8	99.2	0.0	2.16	0.29	0.88	0.88	1.91	53970	7336	14	0	0	0	0	logfile
✔	7XoR	33357	2024-12-27	2022-05-01	3.3	3.57	3.01	3.4	0.003	0.52	0.0	0.04	12.60	0.00	2.273	9.71	0.00	1.3	98.7	0.0	2.15	0.56	0.86	2.32	3.4	0.003	0.55	0.0	0.04	14.55	0.00	2.583	8.81	1.49	1.9	98.1	0.0	1.89	0.36	0.59	0.88	2.05	3855	524	1	0	0	0	0	logfile

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