Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XoG	33347	2024-12-28	2022-05-01	3.5	4.22	3.58	3.7	0.051	2.66	18.0	0.11	17.98	0.01	1.481	13.64	2.61	5.8	94.2	0.0	-2.67	0.75	0.63	1.50	3.8	0.045	1.42	0.0	0.05	16.44	0.02	2.391	8.68	2.61	4.8	95.1	0.1	0.91	2.04	0.86	0.84	2.02	8808	1044	21	0	57	0	0	logfile
✔	7XoJ	33349	2024-12-28	2022-05-01	2.8	3.84	2.82	3.2	0.003	0.48	0.0	0.04	13.28	0.00	2.189	10.04	0.00	0.9	99.1	0.0	2.28	0.88	0.87	2.08	3.2	0.003	0.57	0.0	0.04	14.90	0.00	2.470	9.29	0.65	0.8	99.2	0.0	2.16	0.29	0.88	0.88	1.91	53970	7336	14	0	0	0	0	logfile
✔	7XoC	33344	2024-12-27	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.49	0.0	0.04	10.96	0.00	2.149	5.34	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.65	0.0	0.04	15.80	0.00	2.237	6.29	1.47	2.9	97.1	0.0	0.79	1.97	0.76	0.82	3.25	6432	786	5	0	5	0	0	logfile
✔	7XoN	33353	2024-12-27	2022-05-01	3.1	3.66	2.94	3.3	0.002	0.47	0.0	0.04	12.44	0.00	2.325	9.45	0.00	1.5	98.5	0.0	2.61	0.57	0.88	2.21	3.3	0.006	0.60	0.0	0.04	14.10	0.00	2.625	9.07	1.49	1.3	98.7	0.0	2.27	0.43	0.59	0.91	2.25	3855	524	1	0	0	0	0	logfile
✔	7XoH	33348	2024-12-30	2022-05-01	3.6	3.64	3.56	3.6	0.004	0.58	0.0	0.04	12.55	0.00	2.005	32.89	4.34	10.6	89.3	0.1	-4.16	0.72	0.83	2.38	3.6	0.006	0.81	0.0	0.05	14.93	0.00	2.562	8.59	3.35	10.1	89.9	0.0	-1.98	0.54	0.73	0.84	2.47	13524	1832	8	0	4	0	0	logfile
✔	7XoM	33352	2024-12-28	2022-05-01	3.2	3.57	3.19	3.2	0.002	0.49	0.0	0.04	13.30	0.00	2.175	10.99	0.02	0.9	99.1	0.0	2.16	0.87	0.86	1.74	3.3	0.003	0.55	0.0	0.04	15.29	0.00	2.354	9.68	1.33	1.0	99.0	0.0	2.05	0.94	0.88	0.88	1.58	54129	7336	15	0	32	0	0	logfile
✔	7XoS	33358	2024-12-27	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	3.3	0.003	0.67	0.0	0.04	15.87	0.00	2.522	10.98	2.48	0.6	99.4	0.0	1.71	0.43	0.55	0.86	1.91	3855	524	1	0	0	0	0	logfile
✔	7Xo9	33341	2024-12-27	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.06	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	2.0	0.004	0.67	0.0	0.04	17.20	0.00	2.041	7.73	1.87	3.2	96.8	0.0	0.21	0.65	0.76	0.80	2.77	6483	793	3	0	5	0	0	logfile
✔	7XoV	33360	2024-12-28	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.005	0.98	0.0	0.05	15.45	0.01	2.542	12.22	2.02	4.1	95.7	0.2	-0.03	1.64	0.52	0.67	1.19	8218	1036	6	0	1	1	0	logfile
✔	7Xoo	33354	2024-12-27	2022-05-01	3.0	3.53	2.84	3.3	0.003	0.46	0.0	0.04	11.95	0.00	2.333	7.79	0.00	1.1	98.9	0.0	2.57	0.58	0.89	1.90	3.3	0.003	0.52	0.0	0.04	13.99	0.00	2.625	6.26	0.50	1.5	98.5	0.0	2.50	0.44	0.58	0.90	2.22	3855	524	1	0	0	0	0	logfile
✔	7XoW	33361	2024-12-28	2022-05-01	3.1	3.48	3.17	3.6	0.005	0.86	0.0	0.05	13.16	0.01	2.198	9.68	0.11	4.7	95.3	0.0	-2.76	0.57	0.74	2.81	3.6	0.003	0.66	0.0	0.04	15.21	0.00	2.547	5.84	2.24	5.0	95.0	0.0	0.01	1.55	0.54	0.73	1.93	8566	1122	6	0	0	0	0	logfile
✔	7XoR	33357	2024-12-27	2022-05-01	3.3	3.57	3.01	3.4	0.003	0.52	0.0	0.04	12.60	0.00	2.273	9.71	0.00	1.3	98.7	0.0	2.15	0.56	0.86	2.32	3.4	0.003	0.55	0.0	0.04	14.55	0.00	2.583	8.81	1.49	1.9	98.1	0.0	1.89	0.36	0.59	0.88	2.05	3855	524	1	0	0	0	0	logfile
✔	7Xo1	33333	2024-12-27	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.005	0.65	0.0	0.05	18.36	0.00	2.614	2.86	1.55	6.7	93.3	0.0	-2.12	0.33	0.45	0.87	5.76	2550	372	6	0	0	0	0	logfile
✔	7Xo2	33334	2024-12-27	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.006	0.60	0.0	0.06	18.98	0.00	2.610	4.00	2.71	7.5	92.5	0.0	-1.67	1.11	0.51	0.89	6.36	2550	372	6	0	0	0	0	logfile
✔	7XNZ	33331	2024-12-30	2022-04-30	3.6	3.72	3.56	3.7	0.004	0.60	0.0	0.04	13.12	0.00	2.146	35.80	3.42	12.0	87.7	0.3	-3.94	0.74	0.83	2.51	3.7	0.004	0.70	0.0	0.05	15.09	0.00	2.526	8.33	5.06	5.4	94.5	0.1	-0.38	0.69	0.76	0.84	2.02	13524	1832	8	0	4	0	0	logfile
✔	7Xo3	33335	2024-12-27	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.003	0.55	0.0	0.05	16.00	0.00	2.641	1.32	1.52	10.4	89.6	0.0	-1.85	0.37	0.50	0.85	5.90	2598	378	6	0	0	0	0	logfile
✔	7Xo0	33332	2024-12-27	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.45	0.0	0.05	17.20	0.00	2.581	3.43	2.71	6.9	93.1	0.0	-2.65	0.30	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	7UV0	26808	2024-12-27	2022-04-29	3.1	3.20	3.07	3.2	0.005	0.61	0.0	0.04	13.42	0.00	2.160	5.85	0.51	7.7	92.3	0.0	0.23	0.59	0.79	2.75	3.3	0.003	0.64	0.0	0.04	15.18	0.00	2.301	7.67	2.78	5.3	94.7	0.0	1.75	1.12	0.54	0.76	1.76	3784	501	2	0	4	0	0	logfile
✔	7UV9	26809	2024-12-31	2022-04-29	3.2	2.64	3.07	3.0	0.009	0.89	0.0	0.06	26.05	0.01	1.561	5.75	0.30	1.4	98.6	0.0	1.22	0.77	0.75	1.70	3.0	0.003	0.60	0.0	0.04	26.80	0.00	2.053	6.70	1.10	2.2	97.8	0.0	1.38	1.07	0.78	0.76	1.38	15342	1164	12	292	2	0	0	logfile
✔	7UUY	26806	2024-12-27	2022-04-29	3.3	3.47	3.28	3.5	0.004	0.58	0.0	0.04	13.50	0.00	2.067	5.68	0.25	5.5	94.5	0.0	0.72	0.61	0.84	2.03	3.5	0.003	0.62	0.0	0.04	14.80	0.00	2.613	6.59	1.76	4.6	95.4	0.0	1.78	1.54	0.59	0.83	1.34	3809	503	2	0	1	0	0	logfile

• ← previous
• Page 220 of 408
• next →