Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UUQ	26800	2024-12-27	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	7ZPo	14859	2024-12-31	2022-04-28	3.24	2.81	3.17	3.1	0.004	0.73	0.0	0.05	16.16	0.00	2.053	10.37	0.00	1.3	98.7	0.0	1.71	0.65	0.82	2.73	3.1	0.005	0.92	1.0	0.05	16.91	0.00	1.806	10.83	1.99	2.8	97.2	0.0	2.12	1.38	0.66	0.86	2.42	15102	1932	20	0	16	0	0	logfile
✔	7XN5	33311	2024-12-28	2022-04-28	3.18	3.41	3.11	3.3	0.005	0.69	0.0	0.05	16.22	0.00	2.242	8.51	0.14	7.6	92.4	0.0	-1.89	0.83	0.84	3.17	3.3	0.003	0.58	0.0	0.04	16.49	0.00	2.415	6.69	1.79	6.9	93.1	0.0	-1.34	0.33	0.83	0.86	2.82	6955	873	5	0	2	0	0	logfile
✔	7XN4	33310	2024-12-27	2022-04-28	3.35	3.60	3.25	3.5	0.005	0.79	1.0	0.05	15.38	0.01	2.223	8.84	0.70	9.8	90.2	0.0	-2.93	0.79	0.81	2.84	3.5	0.003	0.66	0.0	0.04	16.34	0.00	2.446	7.37	1.26	8.5	91.5	0.0	-2.12	0.95	0.80	0.83	2.54	6859	859	5	0	1	0	0	logfile
✔	7XN6	33312	2024-12-27	2022-04-28	3.45	3.69	3.42	3.6	0.007	0.96	2.0	0.06	15.94	0.01	1.596	11.25	0.70	8.6	91.4	0.0	-3.19	0.79	0.79	2.08	3.6	0.004	0.67	0.0	0.04	17.23	0.00	2.482	8.31	2.93	8.5	91.5	0.0	-2.50	0.43	0.80	0.83	2.15	6874	861	6	0	2	0	0	logfile
✔	7XN7	33313	2024-12-31	2022-04-28	3.1	3.76	3.04	3.1	0.004	0.50	0.0	0.04	14.59	0.00	2.019	6.56	0.00	2.2	97.8	0.0	1.50	0.80	0.70	1.58	3.1	0.006	0.60	0.0	0.04	15.86	0.00	2.006	6.95	0.54	2.8	97.1	0.0	1.53	0.50	0.85	0.85	1.57	66076	7929	33	114	11	0	0	logfile
✔	7XN3	33309	2024-12-30	2022-04-27	2.9	3.05	2.92	3.0	0.006	0.62	0.0	0.05	13.52	0.00	2.174	6.06	2.37	7.9	92.1	0.0	-0.76	0.72	0.84	3.66	3.0	0.004	0.61	0.0	0.05	14.57	0.00	2.554	3.60	1.19	6.8	93.2	0.0	0.14	0.36	0.74	0.86	3.40	14016	1830	18	0	12	54	0	logfile
✔	7ZPA	14852	2024-12-28	2022-04-27	3.9	4.14	3.88	4.0	0.006	0.70	0.0	0.04	19.49	0.01	2.214	9.92	0.00	6.4	93.6	0.0	-0.40	0.76	0.75	1.14	4.0	0.003	0.63	0.0	0.04	20.90	0.00	2.048	8.54	1.81	6.2	93.8	0.0	-0.43	0.43	0.76	0.76	0.83	9121	874	4	95	0	0	0	logfile
✔	7UTN	26782	2024-12-28	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.54	0.0	0.03	23.21	0.00	2.517	6.76	0.58	1.3	98.7	0.0	1.02	0.28	0.82	0.85	4.11	8003	397	4	228	0	0	0	logfile
✔	7ZoL	14847	2024-12-31	2022-04-26	3.03	3.33	3.14	3.3	0.003	0.64	0.0	0.05	17.39	0.00	2.216	6.74	0.20	6.5	92.6	0.8	-0.47	0.69	0.74	1.68	3.3	0.003	0.64	0.0	0.04	18.01	0.00	2.330	6.45	0.79	6.9	92.4	0.7	-0.69	0.39	0.69	0.77	1.82	15440	1852	4	39	4	0	0	logfile
✔	7XMT	33304	2024-12-28	2022-04-26	2.8	2.93	2.65	3.0	0.002	0.47	0.0	0.04	9.40	0.00	2.267	6.46	0.00	3.0	97.0	0.0	-3.88	0.55	0.63	1.96	2.9	0.004	0.76	0.0	0.04	14.64	0.00	2.496	12.16	1.99	3.7	96.3	0.0	-0.58	1.30	0.61	0.75	2.69	8137	1068	6	0	1	0	0	logfile
✔	7USW	26741	2024-12-31	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.92	0.0	0.04	17.02	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.003	0.52	0.0	0.04	16.26	0.00	2.293	4.48	1.38	2.9	97.1	0.0	2.63	0.27	0.64	0.83	2.16	14322	1676	12	0	68	0	0	logfile
✔	7XMS	33303	2024-12-28	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.004	0.75	0.0	0.04	14.98	0.00	2.499	11.61	2.19	3.9	96.1	0.0	-0.47	0.78	0.60	0.75	1.92	8370	1113	6	0	0	0	0	logfile
✔	7XML	33300	2024-12-28	2022-04-26	3.2	3.67	3.32	3.6	0.009	0.93	0.0	0.06	10.11	0.01	2.350	3.25	0.00	8.1	91.6	0.2	-4.61	0.64	0.80	3.23	3.6	0.003	0.60	0.0	0.04	13.86	0.00	2.535	3.91	1.72	5.5	94.5	0.0	-1.31	1.59	0.71	0.84	2.66	7626	990	5	0	2	0	0	logfile
✔	7XMR	33302	2024-12-27	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.68	0.0	0.04	14.69	0.00	2.528	9.64	3.16	3.4	96.6	0.0	0.07	0.65	0.59	0.74	1.63	6611	871	5	0	0	0	0	logfile
✔	7ZoX	14849	2024-12-27	2022-04-26	4.4	3.95	4.37	3.8	0.005	0.72	0.0	0.04	15.62	0.00	2.219	17.13	0.14	7.7	92.3	0.0	-4.40	0.84	0.80	—	3.8	0.005	0.74	0.0	0.04	15.28	0.00	2.472	14.02	0.00	6.5	93.5	0.0	-0.94	1.08	0.84	0.80	—	6772	852	3	0	0	0	0	logfile
✔	7USX	26742	2024-12-31	2022-04-26	3.09	3.45	3.15	3.4	0.004	0.86	0.0	0.04	17.36	0.01	2.223	9.94	0.14	3.7	96.3	0.0	1.65	0.62	0.78	1.63	3.4	0.003	0.52	0.0	0.04	16.69	0.00	2.354	5.71	2.82	3.4	96.6	0.0	2.08	0.35	0.56	0.78	1.37	14220	1670	12	0	54	0	0	logfile
✔	7XMF	33295	2024-12-30	2022-04-25	3.07	3.32	3.09	3.3	0.008	0.87	3.0	0.05	16.55	0.01	1.953	16.26	3.37	5.6	94.1	0.4	-2.41	0.55	0.73	2.36	3.3	0.003	0.66	0.0	0.04	17.34	0.00	2.461	8.77	2.90	4.3	95.6	0.1	0.51	0.57	0.61	0.81	1.93	11709	1433	7	0	11	0	0	logfile
✔	7USM	26739	2024-12-30	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.83	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.004	0.75	0.0	0.05	16.20	0.00	2.209	7.93	1.98	4.0	96.0	0.0	-0.64	0.48	0.74	0.72	2.40	11893	1521	5	0	15	0	0	logfile
✔	7XM9	33292	2024-12-30	2022-04-25	3.22	3.46	3.25	3.5	0.007	0.86	3.0	0.05	17.02	0.01	1.933	19.20	3.45	4.7	95.0	0.3	-1.91	0.54	0.72	1.74	3.5	0.003	0.65	0.0	0.04	17.20	0.00	2.476	7.13	3.96	4.1	95.8	0.1	1.02	1.15	0.54	0.79	1.84	12490	1523	7	0	11	0	0	logfile

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