Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XMF	33295	2024-12-30	2022-04-25	3.07	3.32	3.09	3.3	0.008	0.87	3.0	0.05	16.55	0.01	1.953	16.26	3.37	5.6	94.1	0.4	-2.41	0.55	0.73	2.36	3.3	0.003	0.66	0.0	0.04	17.34	0.00	2.461	8.77	2.90	4.3	95.6	0.1	0.51	0.57	0.61	0.81	1.93	11709	1433	7	0	11	0	0	logfile
✔	7Zo8	14843	2024-12-28	2022-04-24	3.6	3.59	3.40	3.6	0.004	0.70	0.0	0.04	16.85	0.00	2.257	8.47	0.42	4.8	94.9	0.4	1.72	0.66	0.80	1.67	3.6	0.003	0.60	0.0	0.04	16.94	0.00	2.443	6.92	1.17	4.0	95.6	0.4	2.01	1.08	0.67	0.80	1.66	8952	1140	4	0	2	0	0	logfile
✔	7ZoA	14845	2024-12-28	2022-04-24	4.0	4.31	4.04	4.2	0.004	0.81	1.0	0.07	24.01	0.00	2.176	9.69	0.11	3.3	96.4	0.4	0.93	0.64	0.75	—	4.2	0.003	0.78	0.0	0.04	18.40	0.00	2.442	8.81	3.30	4.4	95.3	0.3	1.40	0.80	0.69	0.81	—	9042	1140	3	0	18	0	0	logfile
✔	7Zo9	14844	2024-12-28	2022-04-24	3.5	3.84	3.61	3.9	0.003	0.63	0.0	0.04	15.33	0.00	2.164	10.83	0.00	7.1	92.7	0.2	0.40	0.68	0.79	1.52	3.8	0.003	0.69	0.0	0.04	16.55	0.00	2.399	8.95	1.41	5.5	94.3	0.2	1.17	0.41	0.67	0.78	1.54	8730	1112	4	0	4	0	0	logfile
✔	7XM1	33289	2024-12-29	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	4.0	0.004	0.57	0.0	0.04	18.77	0.00	2.292	3.76	1.92	3.5	96.5	0.0	2.19	0.64	0.75	0.84	1.89	60240	7380	101	0	60	0	0	logfile
✔	7USB	26731	2024-12-27	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.32	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.65	0.0	0.05	12.90	0.00	2.508	5.46	2.08	4.0	96.0	0.0	-1.27	1.34	0.59	0.82	5.25	1661	213	3	0	5	0	0	logfile
✔	7ZNY	14842	2024-12-31	2022-04-23	3.26	3.51	3.24	3.5	0.003	0.63	0.0	0.05	12.60	0.00	2.233	8.53	0.00	4.7	95.3	0.0	-1.12	0.74	0.76	2.30	3.5	0.003	0.59	0.0	0.05	13.83	0.00	2.423	7.20	2.81	5.5	94.5	0.0	-0.73	0.35	0.73	0.76	2.20	14763	1879	4	0	0	0	0	logfile
✔	7US9	26729	2024-12-27	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.49	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.004	0.84	0.0	0.11	12.04	0.01	2.505	5.42	1.23	3.1	96.9	0.0	0.19	1.45	0.60	0.78	3.51	1127	145	3	0	4	0	0	logfile
✔	7URV	26719	2024-12-27	2022-04-22	3.05	3.32	2.93	3.5	0.005	0.97	1.0	0.06	14.08	0.01	2.300	11.25	0.78	6.9	92.8	0.2	-1.04	0.64	0.78	3.35	3.5	0.004	0.67	0.0	0.04	15.58	0.01	2.596	10.08	2.85	6.9	93.1	0.0	-0.86	0.39	0.63	0.80	2.89	3460	445	2	0	0	0	0	logfile
✔	7ZNU	14814	2024-12-28	2022-04-22	4.0	4.28	4.04	4.1	0.003	0.64	0.0	0.04	15.16	0.00	2.173	9.52	0.00	3.2	96.7	0.2	1.40	0.69	0.74	—	4.1	0.003	0.85	0.0	0.05	17.16	0.00	2.372	11.69	1.95	5.3	94.7	0.0	1.06	0.94	0.71	0.78	—	8730	1112	4	0	4	0	0	logfile
✔	7URi	26713	2024-12-27	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.37	0.0	0.06	28.69	0.01	2.168	19.15	0.00	0.0	0.0	0.0	—	2.07	0.08	0.37	—	1905	0	1	90	0	0	0	logfile
✔	7XLM	33284	2024-12-28	2022-04-22	3.73	4.01	3.65	4.0	0.008	1.09	0.0	0.06	15.99	0.01	2.287	4.87	0.97	12.7	87.1	0.3	-5.14	0.64	0.83	1.81	4.0	0.003	0.69	0.0	0.04	17.41	0.00	2.548	4.87	3.20	9.9	90.1	0.0	-1.22	1.19	0.63	0.82	2.25	9268	1190	4	0	2	0	0	logfile
✔	7URM	26714	2024-12-27	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.73	0.01	2.031	24.03	0.00	0.0	0.0	0.0	—	1.64	0.15	0.52	—	1905	0	1	90	0	0	0	logfile
✔	7ZNN	14812	2024-12-31	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.004	0.75	0.0	0.04	13.46	0.00	2.389	26.04	0.00	5.5	94.4	0.1	-1.74	2.41	0.88	0.71	—	14606	1814	4	0	1	0	0	logfile
✔	7URG	26712	2024-12-27	2022-04-21	3.46	3.69	3.49	3.7	0.002	0.50	0.0	0.04	15.44	0.00	2.049	4.69	0.00	3.5	96.5	0.0	0.73	0.69	0.75	2.59	3.7	0.002	0.52	0.0	0.04	16.67	0.00	2.449	3.72	2.42	3.1	96.9	0.0	0.46	0.53	0.73	0.78	2.46	6260	802	4	0	2	0	0	logfile
✔	7URD	26709	2024-12-27	2022-04-21	2.92	3.41	2.97	3.3	0.017	0.95	0.0	0.83	26.24	0.00	2.177	10.24	0.00	5.0	95.0	0.0	-2.44	0.59	0.86	3.86	3.3	0.003	1.10	0.0	0.12	19.94	0.00	2.458	5.49	1.04	3.6	96.4	0.0	1.28	0.96	0.55	0.85	3.23	5534	678	5	0	6	0	0	logfile
✔	7ZNQ	14813	2024-12-30	2022-04-21	3.04	3.71	3.05	3.5	0.004	0.90	1.0	0.05	15.84	0.01	1.840	4.48	0.22	6.0	93.7	0.3	-2.57	0.75	0.88	2.06	3.5	0.006	0.66	0.0	0.04	16.13	0.00	1.920	5.63	2.74	5.6	94.1	0.3	0.31	0.88	0.75	0.89	2.00	12862	1670	8	0	3	0	0	logfile
✔	7UQX	26701	2024-12-29	2022-04-20	3.3	2.35	3.18	2.0	0.003	0.52	0.0	0.04	11.93	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.003	0.62	0.0	0.04	14.42	0.00	2.132	10.12	3.49	4.3	95.7	0.0	-0.02	0.95	0.75	0.75	3.14	9491	1154	7	2	5	0	0	logfile
✔	7ZN7	14802	2024-12-29	2022-04-20	3.78	4.02	3.79	4.0	0.006	1.05	0.0	0.06	13.00	0.01	2.209	11.08	1.39	5.6	94.3	0.1	-2.48	0.75	0.76	1.50	4.0	0.005	0.95	0.0	0.04	15.80	0.00	2.313	12.60	3.03	4.9	95.1	0.0	-0.64	1.90	0.76	0.76	1.75	10497	1311	4	0	1	0	0	logfile
✔	7ZN5	14801	2024-12-28	2022-04-20	3.7	4.05	—	3.9	0.005	0.62	0.0	0.04	18.87	0.01	2.205	7.33	0.13	6.5	93.5	0.0	0.18	0.74	0.76	0.98	3.9	0.003	0.58	0.0	0.04	20.65	0.00	2.508	8.14	2.87	5.5	94.5	0.0	0.18	0.47	0.75	0.77	1.01	9046	865	4	95	0	0	0	logfile

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