Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UQY	26702	2024-12-29	2022-04-20	3.0	2.33	2.95	2.1	0.003	0.59	0.0	0.04	13.64	0.00	2.197	10.04	0.00	5.0	95.0	0.0	-0.18	0.76	0.70	3.53	2.0	0.003	0.66	0.0	0.04	15.60	0.00	2.511	10.04	1.92	4.5	95.5	0.0	0.05	0.43	0.75	0.75	3.03	9556	1167	4	1	3	0	0	logfile
✔	7XK3	33242	2024-12-31	2022-04-19	3.1	3.33	3.10	3.3	0.007	0.96	6.0	0.05	17.00	0.01	1.026	6.23	0.58	3.3	96.5	0.2	-2.55	0.71	0.88	3.79	3.3	0.005	0.61	0.0	0.04	16.11	0.01	2.407	5.12	1.42	3.5	96.5	0.1	0.20	0.35	0.72	0.90	3.41	14846	1894	11	0	11	0	0	logfile
✔	7XK8	33247	2024-12-27	2022-04-19	3.3	3.49	3.12	3.4	0.002	0.48	0.0	0.04	11.62	0.00	2.248	7.78	0.00	3.1	96.9	0.0	-1.25	0.55	0.65	0.38	3.4	0.003	0.65	0.0	0.04	14.85	0.00	2.444	10.06	4.18	3.7	96.3	0.0	0.50	0.62	0.58	0.72	0.83	6796	923	6	0	1	0	0	logfile
✔	7XK6	33245	2024-12-31	2022-04-19	3.0	3.24	3.01	3.3	0.007	1.01	10.0	0.06	16.49	0.01	2.129	4.82	0.70	3.4	96.3	0.3	-2.57	0.68	0.87	3.66	3.3	0.003	0.57	0.0	0.04	16.25	0.00	2.437	3.90	1.54	3.0	97.0	0.0	0.37	1.31	0.69	0.88	3.27	15123	1919	16	0	12	49	0	logfile
✔	7XKD	33248	2024-12-30	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.11	0.01	1.832	14.21	0.94	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.003	0.65	0.0	0.04	16.46	0.00	2.437	6.95	3.66	4.3	95.7	0.0	0.81	0.45	0.74	0.86	2.71	7962	1008	6	0	1	1	0	logfile
✔	7XK5	33244	2024-12-31	2022-04-19	3.1	3.36	3.15	3.4	0.007	0.95	3.0	0.05	16.03	0.01	2.139	5.84	0.45	3.1	96.8	0.1	-2.20	0.70	0.87	2.78	3.4	0.003	0.56	0.0	0.04	15.95	0.00	2.360	5.53	1.23	2.4	97.6	0.0	0.31	1.30	0.72	0.89	2.67	14834	1894	11	0	11	0	0	logfile
✔	7XKF	33250	2024-12-30	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.09	0.01	2.055	14.66	1.06	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.004	0.66	0.0	0.04	16.39	0.00	2.438	7.14	2.59	4.0	96.0	0.0	0.81	0.48	0.74	0.85	2.70	7961	1008	6	0	1	0	0	logfile
✔	7XJZ	33238	2024-12-29	2022-04-19	3.9	4.23	3.91	4.0	0.004	0.59	0.0	0.04	16.50	0.00	2.218	6.48	3.13	4.2	95.8	0.0	-1.22	0.83	0.84	1.97	4.0	0.002	0.59	0.0	0.04	17.00	0.00	2.540	5.29	1.57	3.4	96.6	0.0	-0.45	0.49	0.82	0.84	1.68	9276	983	2	72	1	0	0	logfile
✔	7XK7	33246	2024-12-31	2022-04-19	2.9	3.16	2.96	3.2	0.008	1.04	11.0	0.06	18.32	0.01	1.978	5.02	0.70	2.5	97.4	0.1	-2.49	0.68	0.88	4.09	3.2	0.003	0.56	0.0	0.04	16.21	0.00	2.423	4.50	0.64	2.4	97.6	0.0	0.39	0.97	0.61	0.86	3.42	15186	1921	14	0	13	35	0	logfile
✔	7XKE	33249	2024-12-29	2022-04-19	2.9	3.36	2.83	3.2	0.006	0.56	0.0	0.04	12.85	0.00	2.213	9.98	0.24	4.2	95.8	0.0	0.17	0.70	0.83	3.16	3.2	0.003	0.62	0.0	0.04	15.47	0.00	2.500	7.95	1.31	3.8	96.2	0.0	0.37	0.47	0.71	0.85	3.00	7922	1009	6	0	1	1	0	logfile
✔	7XJY	33237	2024-12-30	2022-04-19	3.6	3.59	3.48	3.7	0.007	0.94	3.0	0.06	14.44	0.01	2.197	9.77	7.59	4.2	95.5	0.3	-0.02	0.64	0.71	1.97	3.6	0.004	0.90	1.0	0.04	16.29	0.00	2.284	7.33	2.12	3.2	96.7	0.1	0.85	1.36	0.67	0.75	2.23	12070	1526	2	0	0	0	0	logfile
✔	7XK4	33243	2024-12-31	2022-04-19	3.1	3.32	3.10	3.3	0.007	0.99	8.0	0.05	16.21	0.01	2.180	5.90	0.71	2.5	97.4	0.1	-2.27	0.70	0.88	2.68	3.3	0.003	0.55	0.0	0.04	16.52	0.00	2.458	5.06	1.69	2.9	97.1	0.0	0.49	0.34	0.64	0.87	2.52	14834	1894	11	0	11	0	0	logfile
✔	7XK2	33241	2024-12-28	2022-04-19	3.1	3.31	3.13	3.3	0.005	1.02	0.0	0.06	16.48	0.01	2.251	6.29	0.32	6.7	93.3	0.0	-2.41	0.64	0.76	2.08	3.3	0.004	0.98	0.0	0.04	17.05	0.00	2.401	11.25	3.53	6.1	93.9	0.0	-0.81	1.11	0.67	0.81	1.99	8791	1128	6	0	1	0	0	logfile
✔	7XJK	33230	2024-12-28	2022-04-18	3.3	3.56	3.42	3.5	0.005	0.65	0.0	0.04	13.52	0.01	2.172	11.97	0.00	2.7	97.3	0.0	0.32	0.64	0.77	2.84	3.6	0.003	0.59	0.0	0.04	15.87	0.00	2.393	7.74	2.86	3.0	97.0	0.0	0.76	0.36	0.64	0.79	2.34	8570	1139	6	0	0	0	0	logfile
✔	7XJX	33236	2024-12-27	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.007	1.55	0.0	0.05	14.69	0.00	2.095	11.89	4.81	11.2	88.8	0.0	-3.39	1.15	0.45	0.81	4.85	2628	378	6	0	0	0	0	logfile
✔	7XJL	33231	2024-12-28	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.004	0.72	0.0	0.05	16.08	0.00	2.505	11.52	3.35	3.1	96.9	0.0	0.99	0.47	0.62	0.78	1.56	8527	1137	6	0	0	0	0	logfile
✔	7XJH	33227	2024-12-28	2022-04-18	3.3	2.96	3.18	3.2	0.003	0.58	0.0	0.04	14.02	0.00	2.218	7.28	0.00	3.1	96.9	0.0	0.45	0.60	0.78	2.05	3.2	0.002	0.56	0.0	0.04	15.39	0.00	2.547	5.80	1.72	3.0	97.0	0.0	0.65	0.37	0.63	0.81	1.73	7832	1027	6	0	1	0	0	logfile
✔	7XJJ	33229	2024-12-28	2022-04-18	3.3	3.59	3.37	3.6	0.007	0.88	5.0	0.07	14.11	0.01	1.771	16.14	0.96	5.1	94.9	0.0	0.40	0.60	0.72	2.40	3.7	0.004	0.64	0.0	0.04	16.14	0.00	2.508	9.64	2.88	4.3	95.7	0.0	0.34	0.41	0.61	0.75	1.72	8710	1126	6	0	0	0	0	logfile
✔	7UPX	26677	2024-12-27	2022-04-18	3.2	3.46	—	3.4	0.013	1.88	4.0	0.11	14.71	0.01	2.176	5.28	2.20	5.4	93.2	1.4	-0.66	0.64	0.88	3.81	3.4	0.003	0.69	0.0	0.04	14.66	0.00	2.403	6.11	1.65	4.0	95.9	0.2	0.48	0.48	0.63	0.87	3.34	4930	635	4	0	3	0	0	logfile
✔	7XJi	33228	2024-12-28	2022-04-18	3.9	3.60	3.70	3.9	0.003	0.60	0.0	0.04	13.92	0.00	2.165	9.02	0.00	4.3	95.7	0.0	-0.25	0.61	0.78	2.35	3.9	0.003	0.59	0.0	0.04	15.66	0.00	2.450	7.93	2.45	3.3	96.7	0.0	0.49	1.27	0.64	0.79	1.44	7851	1027	6	0	1	0	0	logfile

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