Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X24	32957	2024-12-29	2022-02-25	3.4	2.84	3.24	3.2	0.006	1.21	0.0	0.05	15.94	0.01	2.080	8.34	0.00	4.0	96.0	0.0	0.37	0.65	0.82	2.68	3.2	0.003	0.56	0.0	0.04	16.37	0.00	2.064	7.14	1.19	4.3	95.7	0.0	0.67	0.31	0.66	0.84	2.30	10286	1263	4	0	14	0	0	logfile
✔	7X2D	32965	2024-12-29	2022-02-25	3.3	3.43	—	3.5	0.005	0.85	1.0	0.05	14.43	0.01	1.860	12.03	0.57	3.0	97.0	0.0	-0.46	0.64	0.79	2.37	3.5	0.005	1.06	2.0	0.05	16.16	0.01	2.414	8.59	2.39	2.8	97.2	0.0	1.29	1.18	0.64	0.83	2.24	8203	1032	6	0	2	0	0	logfile
✔	7X26	32959	2024-12-27	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.004	0.81	0.0	0.05	16.09	0.00	2.437	10.17	4.36	10.6	89.0	0.5	-2.12	1.68	0.71	0.76	1.85	4828	641	3	0	0	0	0	logfile
✔	7Z24	14457	2024-12-28	2022-02-25	3.32	2.74	3.27	3.3	0.007	1.05	2.0	0.08	18.10	0.01	2.387	7.61	2.07	2.8	97.2	0.0	-0.18	0.57	0.71	2.96	3.3	0.003	0.58	0.0	0.04	18.99	0.00	2.503	5.89	2.55	1.7	98.3	0.0	0.33	1.04	0.57	0.72	2.81	8303	929	4	36	1	0	0	logfile
✔	7X2F	32966	2024-12-29	2022-02-25	3.0	3.70	—	3.6	0.006	0.83	2.0	0.05	12.87	0.01	2.164	13.36	0.11	3.2	96.8	0.0	-0.87	0.58	0.73	2.55	3.6	0.003	0.59	0.0	0.04	15.42	0.00	2.501	6.28	2.16	2.2	97.8	0.0	1.20	0.46	0.55	0.72	2.02	8249	1036	6	0	4	0	0	logfile
✔	7X2C	32964	2024-12-29	2022-02-25	3.2	3.88	—	3.8	0.006	0.71	0.0	0.05	13.49	0.00	2.102	9.59	0.48	2.0	98.0	0.0	0.97	0.58	0.72	1.80	3.8	0.003	0.59	0.0	0.04	15.48	0.00	2.431	7.66	2.18	1.6	98.4	0.0	1.30	0.39	0.58	0.72	1.42	7953	1031	6	0	3	0	0	logfile
✔	7X22	32955	2024-12-29	2022-02-25	3.0	2.35	2.94	2.9	0.005	1.15	0.0	0.04	14.02	0.00	1.926	25.96	0.00	3.5	96.5	0.0	1.84	0.42	0.71	3.12	2.9	0.003	0.79	0.0	0.04	16.09	0.00	1.938	6.92	2.85	4.3	95.7	0.0	1.09	0.48	0.56	0.81	2.57	10257	1263	5	0	14	1	0	logfile
✔	7X25	32958	2024-12-26	2022-02-25	2.49	2.74	—	2.8	0.008	1.08	2.0	0.06	17.29	0.00	1.050	8.51	9.22	10.3	88.6	1.1	-1.98	0.59	0.32	0.12	1.8	0.005	1.09	5.0	0.07	17.01	0.01	2.072	13.98	1.89	7.7	92.0	0.3	-1.48	1.72	0.80	0.70	1.39	37110	4844	9	0	0	0	0	logfile
✔	7X23	32956	2024-12-29	2022-02-25	3.2	2.34	3.00	3.0	0.004	0.59	0.0	0.04	13.25	0.00	2.232	9.24	0.00	2.9	97.1	0.0	1.28	0.53	0.64	1.83	3.0	0.003	0.56	0.0	0.04	15.48	0.00	2.254	7.64	1.83	3.5	96.5	0.0	1.11	0.99	0.56	0.76	1.90	9976	1262	5	0	5	7	0	logfile
✔	7X21	32954	2024-12-29	2022-02-25	2.8	2.23	2.65	2.6	0.005	1.15	0.0	0.05	14.86	0.01	1.943	7.40	0.00	4.0	96.0	0.0	0.45	0.58	0.79	3.97	2.6	0.003	0.80	0.0	0.04	16.67	0.00	2.007	5.84	2.39	3.6	96.4	0.0	0.63	0.33	0.60	0.82	3.42	10167	1263	5	0	10	18	0	logfile
✔	7U2T	26319	2024-12-29	2022-02-24	3.25	3.34	—	3.3	0.014	1.54	4.0	0.09	10.50	0.01	2.021	1.64	1.77	3.4	96.3	0.3	0.15	0.71	0.79	3.73	3.3	0.003	0.56	0.0	0.05	14.78	0.00	2.563	4.66	1.86	1.7	98.0	0.3	0.15	0.66	0.72	0.84	3.82	10300	1336	8	0	8	0	0	logfile
✔	7U2Q	26318	2024-12-29	2022-02-24	3.2	3.38	—	3.4	0.013	1.52	0.0	0.09	12.14	0.01	2.022	1.71	4.83	4.0	95.7	0.3	-0.35	0.74	0.80	3.99	3.4	0.003	0.59	0.0	0.05	14.14	0.00	2.337	3.41	1.90	1.7	98.0	0.3	-0.62	0.70	0.73	0.84	3.35	10536	1352	8	0	8	0	0	logfile
✔	7X1M	32944	2024-12-31	2022-02-24	2.74	3.01	—	3.0	0.005	0.88	0.0	0.05	12.81	0.01	2.195	6.56	0.18	7.8	92.0	0.2	-1.86	0.66	0.82	3.95	3.0	0.003	0.64	0.0	0.04	15.86	0.01	2.505	4.87	3.09	6.2	93.6	0.2	-0.98	0.33	0.65	0.84	3.30	9908	1291	8	0	3	0	0	logfile
✔	7X1W	32951	2024-12-29	2022-02-24	3.3	3.45	—	3.4	0.007	0.76	0.0	0.04	15.42	0.00	2.163	7.80	0.00	6.5	93.5	0.0	-0.77	0.64	0.83	2.49	3.4	0.004	0.61	0.0	0.04	16.19	0.00	2.519	6.36	2.26	5.7	94.3	0.0	0.26	1.89	0.64	0.85	1.94	9315	1159	4	0	2	0	0	logfile
✔	7U2N	26316	2024-12-30	2022-02-24	2.8	3.30	—	3.4	0.007	0.80	0.0	0.05	12.41	0.00	2.034	23.96	0.00	8.6	91.4	0.0	-4.23	0.52	0.81	5.21	3.3	0.003	0.75	0.0	0.04	14.92	0.00	2.504	9.73	1.45	4.5	95.5	0.0	-0.69	1.10	0.51	0.81	3.99	14080	1725	15	0	20	0	0	logfile
✔	7X1T	32949	2024-12-28	2022-02-24	3.26	3.46	—	3.5	0.007	0.98	3.0	0.22	13.90	0.01	1.351	5.09	0.92	8.9	91.0	0.1	-5.73	0.60	0.70	1.68	3.5	0.003	0.71	0.0	0.05	15.05	0.00	1.621	8.20	3.97	7.4	92.6	0.0	-3.16	0.46	0.61	0.72	1.76	7488	1082	7	0	1	0	0	logfile
✔	7Z1o	14451	2024-12-26	2022-02-24	2.7	2.27	—	2.1	0.004	0.65	0.0	0.05	14.18	0.01	2.062	3.97	0.00	2.5	97.5	0.0	0.03	0.79	0.79	3.39	2.1	0.003	0.55	0.0	0.04	16.56	0.00	1.984	5.10	1.52	2.7	97.3	0.0	0.99	0.35	0.82	0.82	3.18	42375	5154	26	66	10	0	0	logfile
✔	7Z1L	14447	2024-12-26	2022-02-24	2.8	2.35	2.84	2.2	0.003	0.65	0.0	0.05	13.55	0.00	2.079	4.15	0.02	2.8	97.2	0.0	-0.22	0.83	0.81	3.45	2.2	0.010	0.64	0.0	0.05	15.79	0.00	1.942	5.24	1.56	3.3	96.7	0.0	0.52	0.31	0.84	0.84	3.25	42330	5156	26	63	10	0	0	logfile
✔	7Z16	14442	2024-12-26	2022-02-24	2.09	2.57	2.21	2.5	0.006	0.73	0.0	0.05	14.77	0.01	1.956	4.89	1.04	2.1	97.9	0.0	1.45	0.77	0.85	5.34	2.5	0.005	0.60	0.0	0.06	15.39	0.00	1.811	2.39	0.54	2.4	97.6	0.0	1.27	1.98	0.71	0.84	5.12	44690	2882	20	0	10	6	22240	logfile
✔	7U2o	26317	2024-12-30	2022-02-24	3.1	3.39	—	3.3	0.007	0.84	0.0	0.05	13.06	0.00	2.022	37.92	0.00	6.5	93.5	0.0	-4.77	0.56	0.82	4.39	3.3	0.003	0.79	0.0	0.05	14.97	0.00	2.409	10.92	3.64	3.9	96.1	0.0	-0.45	0.77	0.56	0.82	3.67	14075	1730	15	0	20	0	0	logfile

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