Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U2Q	26318	2024-12-29	2022-02-24	3.2	3.38	—	3.4	0.013	1.52	0.0	0.09	12.14	0.01	2.022	1.71	4.83	4.0	95.7	0.3	-0.35	0.74	0.80	3.99	3.4	0.003	0.59	0.0	0.05	14.14	0.00	2.337	3.41	1.90	1.7	98.0	0.3	-0.62	0.70	0.73	0.84	3.35	10536	1352	8	0	8	0	0	logfile
✔	7U2M	26315	2024-12-30	2022-02-24	2.9	3.22	—	3.3	0.008	0.88	0.0	0.05	13.14	0.00	2.033	29.73	0.00	5.3	94.7	0.0	-3.83	0.57	0.86	5.01	3.1	0.004	0.82	0.0	0.05	15.57	0.00	2.469	9.67	4.07	3.9	96.1	0.0	-0.38	1.18	0.54	0.85	3.81	14155	1730	15	0	20	0	0	logfile
✔	7Z14	14440	2024-12-31	2022-02-24	3.15	3.57	—	3.5	0.004	0.72	1.0	0.05	14.57	0.00	2.128	10.06	0.00	4.4	95.6	0.0	-0.09	0.62	0.79	3.59	3.5	0.003	0.64	2.0	0.04	15.03	0.00	2.533	8.51	1.58	3.5	96.5	0.0	0.35	1.21	0.64	0.82	3.23	15856	1913	13	0	28	0	0	logfile
✔	7X1W	32951	2024-12-29	2022-02-24	3.3	3.45	—	3.4	0.007	0.76	0.0	0.04	15.42	0.00	2.163	7.80	0.00	6.5	93.5	0.0	-0.77	0.64	0.83	2.49	3.4	0.004	0.61	0.0	0.04	16.19	0.00	2.519	6.36	2.26	5.7	94.3	0.0	0.26	1.89	0.64	0.85	1.94	9315	1159	4	0	2	0	0	logfile
✔	7Z0Z	14435	2024-12-28	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.003	0.48	0.0	0.04	16.60	0.00	2.556	4.37	1.09	2.0	97.8	0.2	1.12	0.92	0.78	0.90	4.29	29466	3510	6	0	0	0	0	logfile
✔	7U2T	26319	2024-12-29	2022-02-24	3.25	3.34	—	3.3	0.014	1.54	4.0	0.09	10.50	0.01	2.021	1.64	1.77	3.4	96.3	0.3	0.15	0.71	0.79	3.73	3.3	0.003	0.56	0.0	0.05	14.78	0.00	2.563	4.66	1.86	1.7	98.0	0.3	0.15	0.66	0.72	0.84	3.82	10300	1336	8	0	8	0	0	logfile
✔	7Z15	14441	2024-12-26	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.88	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	2.3	0.003	0.56	0.0	0.04	16.23	0.00	1.865	2.69	0.79	2.2	97.8	0.0	1.63	0.92	0.76	0.88	5.87	46112	2888	32	0	16	1171	22357	logfile
✔	7Z1M	14448	2024-12-26	2022-02-24	3.4	3.57	3.50	3.5	0.004	0.69	0.0	0.05	15.31	0.00	2.100	4.76	0.00	3.3	96.7	0.0	-0.32	0.88	0.84	2.45	3.5	0.003	0.66	1.0	0.04	16.55	0.00	2.016	6.87	0.88	3.1	96.8	0.0	0.47	0.31	0.89	0.86	2.04	42122	5153	26	53	10	0	0	logfile
✔	7Z0L	14427	2024-12-30	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.95	0.0	0.06	15.67	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.69	0.0	0.04	15.20	0.00	2.359	9.86	2.84	4.4	95.6	0.0	0.45	0.98	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✔	7U2B	26311	2024-12-28	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	18.56	0.00	1.936	7.07	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.62	0.0	0.04	18.38	0.00	2.526	7.14	0.00	2.1	97.9	0.0	1.37	1.83	0.78	0.79	—	7316	780	5	53	2	0	0	logfile
✔	7U2A	26310	2024-12-28	2022-02-23	4.1	3.51	—	4.0	0.010	1.05	0.0	0.05	18.07	0.00	1.918	11.25	0.31	0.5	99.5	0.0	2.04	0.59	0.61	—	4.0	0.004	0.75	0.0	0.04	18.11	0.00	2.494	13.51	0.00	3.5	96.5	0.0	0.15	1.08	0.66	0.73	—	6855	761	5	38	2	0	0	logfile
✔	7Z0o	14428	2024-12-30	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.64	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.58	0.0	0.04	21.11	0.00	2.557	7.49	5.15	1.8	98.2	0.0	1.74	0.81	0.77	0.79	3.37	11864	1256	10	78	0	0	0	logfile
✔	7U23	26306	2024-12-30	2022-02-22	4.6	5.00	4.74	4.6	0.004	0.59	0.0	0.04	11.88	0.00	2.198	17.46	2.67	6.7	92.9	0.4	-1.99	0.78	0.60	—	4.6	0.003	0.67	0.0	0.05	12.18	0.00	2.477	12.73	0.00	5.8	94.0	0.2	-0.91	1.50	0.83	0.74	—	11688	1462	4	0	0	0	0	logfile
✔	7X10	32932	2024-12-28	2022-02-22	2.93	2.29	—	2.1	0.005	0.80	0.0	0.05	12.69	0.00	2.192	2.72	0.00	7.5	92.5	0.0	-1.18	0.75	0.73	2.91	2.0	0.004	0.68	0.0	0.04	15.48	0.00	2.474	4.80	2.53	5.8	94.2	0.0	-0.33	1.15	0.76	0.76	2.22	8674	1098	5	0	0	0	0	logfile
✔	7X0V	32926	2024-12-30	2022-02-22	3.2	3.39	—	3.3	0.005	0.61	5.0	0.05	10.89	0.00	1.018	6.95	3.50	4.9	95.1	0.0	-5.90	0.79	0.77	1.76	3.3	0.003	0.73	1.0	0.04	15.99	0.00	1.846	8.82	2.50	5.3	94.7	0.0	0.14	4.28	0.82	0.85	1.45	65000	8440	48	0	48	16	0	logfile
✔	7X0Z	32930	2024-12-29	2022-02-22	2.96	3.20	—	3.2	0.007	0.79	0.0	0.04	14.78	0.00	1.974	7.24	0.00	4.8	95.2	0.0	0.45	0.65	0.84	3.46	3.2	0.003	0.57	0.0	0.04	16.94	0.00	1.921	4.83	2.06	4.2	95.8	0.0	1.21	0.90	0.66	0.86	2.79	9285	1156	4	0	4	0	0	logfile
✔	7U1T	26305	2024-12-28	2022-02-22	3.3	4.15	—	3.3	0.013	1.63	0.0	0.17	24.34	0.00	2.312	57.79	4.77	5.8	93.0	1.2	-1.17	0.76	0.53	0.99	3.4	0.004	0.77	0.0	0.04	25.86	0.01	2.427	11.74	3.30	7.5	92.2	0.3	-0.45	1.88	0.88	0.79	0.96	7574	675	6	118	0	0	0	logfile
✔	7X07	32919	2024-12-29	2022-02-21	3.78	4.03	—	4.0	0.013	1.66	0.0	0.08	15.38	0.01	2.145	8.39	1.97	8.1	91.2	0.7	-4.75	0.61	0.78	1.72	4.0	0.007	0.84	0.0	0.05	17.13	0.01	2.524	8.35	2.62	8.7	91.3	0.0	-3.01	0.98	0.62	0.76	0.97	10125	1266	3	0	1	0	0	logfile
✔	7X06	32918	2024-12-30	2022-02-21	3.1	3.31	—	3.2	0.003	0.51	0.0	0.04	10.80	0.00	2.215	3.96	0.43	4.1	95.9	0.0	2.06	0.66	0.82	2.47	3.2	0.005	0.94	1.0	0.05	14.87	0.00	1.768	4.66	3.11	6.2	93.8	0.0	1.63	1.16	0.65	0.84	1.95	12964	1608	6	2	2	0	0	logfile
✔	7YZo	14391	2024-12-31	2022-02-21	3.4	3.53	3.40	3.5	0.004	0.70	0.0	0.04	17.73	0.00	1.498	5.76	0.08	3.2	96.8	0.0	0.79	0.80	0.83	2.80	3.5	0.003	0.59	0.0	0.04	19.09	0.00	1.937	6.08	1.73	2.6	97.4	0.0	0.67	0.34	0.81	0.84	2.31	13068	1497	10	62	8	0	0	logfile

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