Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYN	26188	2024-12-29	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.62	1.0	0.05	13.82	0.00	2.216	5.53	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.003	0.59	0.0	0.04	15.98	0.00	2.484	4.94	2.75	2.2	97.8	0.0	1.18	0.47	0.67	0.83	3.00	9364	1154	8	0	18	0	0	logfile
✔	7WWK	32868	2024-12-27	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.6	0.003	0.60	0.0	0.04	14.92	0.00	2.516	5.38	2.63	4.7	95.3	0.0	-0.79	0.39	0.75	0.90	2.88	6620	845	6	0	0	0	0	logfile
✔	7TYi	26180	2024-12-29	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.57	0.0	0.04	12.81	0.00	2.217	6.55	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.003	0.56	0.0	0.04	15.15	0.00	2.436	6.18	3.00	2.7	97.3	0.0	0.40	0.52	0.64	0.83	2.59	9413	1154	8	0	13	0	0	logfile
✔	7TYM	26185	2024-12-30	2022-02-13	3.4	3.43	—	3.5	0.002	0.54	0.0	0.04	15.94	0.00	2.028	8.12	0.00	7.1	92.8	0.1	-1.35	0.73	0.81	2.62	3.5	0.003	0.59	0.0	0.04	16.42	0.00	2.513	6.44	2.59	7.9	92.1	0.0	-1.61	1.56	0.72	0.82	3.15	12112	1542	2	0	0	0	0	logfile
✔	7TYF	26178	2024-12-29	2022-02-13	2.2	2.16	2.14	2.2	0.004	0.57	0.0	0.04	14.57	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.61	0.0	0.04	15.87	0.00	2.522	5.27	2.23	2.0	98.0	0.0	0.94	0.47	0.66	0.86	4.51	10331	1266	14	0	16	83	0	logfile
✔	7TYH	26179	2024-12-29	2022-02-13	3.3	3.26	3.31	3.4	0.003	0.61	0.0	0.04	12.28	0.01	2.274	4.73	1.05	1.9	98.1	0.0	-4.28	0.61	0.76	2.36	3.4	0.003	0.60	0.0	0.04	15.51	0.00	2.519	7.56	2.83	2.8	97.2	0.0	-0.79	0.50	0.59	0.78	2.38	9492	1246	8	0	1	0	0	logfile
✔	7WVZ	32863	2024-12-28	2022-02-12	3.38	3.15	3.39	3.4	0.012	1.77	5.0	0.09	12.99	0.02	2.526	0.04	1.38	4.3	95.5	0.1	-0.87	0.60	0.69	2.71	3.4	0.003	0.60	0.0	0.04	14.47	0.01	2.361	3.27	1.18	3.3	96.7	0.0	0.37	1.37	0.69	0.81	2.34	49889	3430	2	0	0	0	24824	logfile
✔	7WWB	32865	2024-12-27	2022-02-12	3.86	4.08	—	4.1	0.008	0.97	0.0	0.07	9.32	0.01	2.511	0.45	0.00	2.5	97.5	0.0	0.18	0.48	0.76	2.65	4.1	0.003	0.74	0.0	0.04	15.58	0.00	2.370	9.66	4.87	4.2	95.8	0.0	3.02	1.99	0.50	0.79	1.87	5428	666	4	0	4	0	0	logfile
✔	7WVW	32860	2024-12-28	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.35	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.56	0.0	0.04	15.87	0.00	2.416	9.28	2.60	3.0	97.0	0.0	0.92	1.18	0.64	0.82	2.42	7169	924	5	0	0	0	0	logfile
✔	7R5M	14331	2024-12-29	2022-02-11	3.3	3.09	3.20	3.2	0.006	0.94	0.0	0.06	14.64	0.00	2.411	1.26	0.80	4.6	95.4	0.0	-0.79	0.70	0.80	2.46	3.1	0.003	0.58	0.0	0.04	16.05	0.00	2.503	2.77	2.15	1.6	98.4	0.0	1.57	2.01	0.69	0.86	2.26	11295	1491	9	0	0	0	0	logfile
✔	7TY7	26168	2024-12-28	2022-02-11	3.37	4.32	3.31	3.9	0.013	1.81	0.0	0.09	13.97	0.01	2.304	4.20	0.45	5.7	94.3	0.0	-3.03	0.66	0.83	2.76	3.9	0.005	0.75	0.0	0.04	14.30	0.00	2.523	8.62	2.23	3.0	97.0	0.0	2.04	1.62	0.65	0.84	2.19	8538	1032	8	0	15	20	0	logfile
✔	7WVU	32858	2024-12-27	2022-02-11	3.3	3.40	—	3.4	0.002	0.47	0.0	0.04	13.25	0.00	2.221	8.52	0.00	2.3	97.7	0.0	0.98	0.58	0.72	1.55	3.4	0.003	0.60	0.0	0.04	15.36	0.00	2.516	10.59	3.28	3.1	96.9	0.0	0.61	0.44	0.61	0.78	2.09	6862	909	5	0	0	0	0	logfile
✔	7WVV	32859	2024-12-27	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.56	0.0	0.04	15.57	0.00	2.541	8.20	1.89	3.1	96.9	0.0	0.51	0.45	0.61	0.79	2.88	7020	911	5	0	0	0	0	logfile
✔	7TY4	26165	2024-12-29	2022-02-11	2.99	4.05	2.94	3.6	0.013	1.80	0.0	0.09	14.46	0.01	2.215	4.91	0.45	5.9	94.0	0.1	-2.69	0.69	0.86	4.04	3.6	0.004	0.73	0.0	0.04	14.75	0.00	2.405	6.37	1.12	2.5	97.5	0.0	1.84	0.61	0.68	0.86	2.23	8636	1030	8	0	14	72	0	logfile
✔	7TYA	26171	2024-12-28	2022-02-11	3.07	3.91	3.07	3.6	0.015	1.81	0.0	0.09	14.95	0.01	2.203	3.85	0.22	4.2	95.8	0.0	-2.07	0.69	0.89	4.04	3.6	0.003	0.55	0.0	0.04	13.92	0.00	2.348	3.79	0.67	2.4	97.6	0.0	2.26	1.19	0.65	0.87	2.98	8617	1032	16	0	14	59	0	logfile
✔	7WVX	32861	2024-12-28	2022-02-11	2.8	2.96	—	3.0	0.002	0.49	0.0	0.04	12.15	0.00	2.251	8.52	0.00	2.1	97.9	0.0	0.86	0.60	0.76	2.80	3.0	0.006	0.69	0.0	0.05	15.57	0.00	2.500	12.21	1.34	3.5	96.5	0.0	0.30	1.18	0.63	0.83	3.00	7070	920	5	0	0	0	0	logfile
✔	7TY8	26169	2024-12-28	2022-02-11	3.18	4.02	3.19	3.6	0.013	1.78	0.0	0.08	14.15	0.01	2.407	7.84	0.78	5.1	94.9	0.0	-3.38	0.64	0.79	2.33	3.7	0.003	0.69	0.0	0.04	15.08	0.00	2.520	9.76	2.01	2.8	97.2	0.0	1.33	1.28	0.63	0.79	2.31	8591	1030	8	0	16	29	0	logfile
✔	7R5R	14334	2024-12-29	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	26.94	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.005	0.64	0.0	0.04	27.96	0.00	2.387	4.51	1.71	3.3	96.7	0.0	2.17	0.92	0.81	0.87	3.35	11625	779	12	266	0	0	0	logfile
✔	7WV9	32850	2024-12-28	2022-02-10	3.36	3.51	—	3.6	0.004	0.73	0.0	0.05	16.05	0.00	2.206	11.96	0.53	5.0	94.9	0.1	-0.80	0.57	0.67	1.09	3.6	0.003	0.66	0.0	0.04	16.37	0.00	2.522	9.91	2.56	5.2	94.8	0.0	-0.79	0.97	0.59	0.71	0.77	8848	1141	6	0	2	0	0	logfile
✔	7R5H	14320	2024-12-28	2022-02-10	2.59	2.63	2.45	2.7	0.011	1.85	4.0	0.11	11.92	0.01	2.519	0.67	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	2.7	0.005	0.62	0.0	0.05	16.25	0.00	2.592	2.15	3.12	4.3	95.7	0.0	-2.25	1.14	0.42	0.89	5.76	7440	477	6	0	0	0	3786	logfile

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