Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R5H	14320	2024-12-28	2022-02-10	2.59	2.63	2.45	2.7	0.011	1.85	4.0	0.11	11.92	0.01	2.519	0.67	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	2.7	0.005	0.62	0.0	0.05	16.25	0.00	2.592	2.15	3.12	4.3	95.7	0.0	-2.25	1.14	0.42	0.89	5.76	7440	477	6	0	0	0	3786	logfile
✔	7WUQ	32838	2024-12-30	2022-02-09	2.9	3.09	—	3.1	0.006	1.06	1.0	0.07	14.17	0.01	2.204	23.10	0.47	5.0	95.0	0.0	-3.00	0.58	0.72	2.29	3.1	0.004	0.71	0.0	0.04	16.77	0.00	2.397	17.50	2.22	4.7	95.3	0.0	-0.63	1.18	0.58	0.78	2.16	7973	1009	5	0	0	0	0	logfile
✔	7R4R	14315	2024-12-28	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.004	1.37	16.0	0.24	16.23	0.00	2.117	19.69	4.76	8.6	91.3	0.1	-2.25	1.28	0.67	0.58	-0.14	50505	3293	12	0	43	0	24171	logfile
✔	7R4Q	14314	2024-12-28	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.866	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.004	1.01	5.0	0.17	15.27	0.00	2.204	16.60	1.55	7.0	93.0	0.0	-1.77	1.65	0.62	0.55	0.51	51420	3414	13	0	43	0	24182	logfile
✔	7TXT	26160	2024-12-30	2022-02-09	3.0	3.54	—	3.4	0.007	0.53	0.0	0.04	12.67	0.00	2.064	8.27	0.00	2.6	97.4	0.0	0.25	0.70	0.86	4.50	3.4	0.003	0.56	0.0	0.04	14.81	0.00	2.155	7.69	0.93	2.5	97.5	0.0	0.60	0.55	0.62	0.87	4.20	12111	772	4	0	1	0	6018	logfile
✔	7WUS	32840	2024-12-27	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.030	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.7	0.003	0.79	0.0	0.05	17.78	0.00	2.546	10.12	3.01	8.0	92.0	0.0	-1.78	1.46	0.70	0.77	1.57	5450	682	2	0	0	0	0	logfile
✔	7R4T	14316	2024-12-28	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.54	0.0	0.05	15.84	0.00	2.633	1.13	0.76	1.1	98.9	0.0	-1.54	1.59	0.42	0.89	5.95	7074	456	6	0	0	0	3606	logfile
✔	7WUT	32841	2024-12-29	2022-02-09	3.5	4.38	—	3.9	0.003	0.83	0.0	0.05	16.78	0.00	2.139	13.93	0.20	13.3	86.4	0.3	-1.82	0.86	0.78	1.34	3.9	0.003	0.82	0.0	0.05	17.40	0.00	2.613	10.97	2.83	12.6	87.1	0.3	-1.49	0.31	0.86	0.78	1.14	9732	1264	4	0	0	0	0	logfile
✔	7WUR	32839	2024-12-28	2022-02-09	3.5	4.22	—	3.7	0.003	0.68	0.0	0.04	14.34	0.00	2.211	11.28	0.31	7.6	92.4	0.0	-1.48	0.79	0.85	2.51	3.7	0.003	0.69	0.0	0.04	15.11	0.00	2.533	8.09	1.13	7.5	92.5	0.0	-1.09	0.38	0.79	0.84	2.58	8922	1134	6	0	0	0	0	logfile
✔	7WUJ	32837	2024-12-28	2022-02-08	3.3	3.09	—	3.1	0.007	1.00	0.0	0.06	13.92	0.01	2.219	18.92	0.51	7.1	92.9	0.0	-4.30	0.58	0.72	2.43	3.2	0.005	0.75	0.0	0.05	15.55	0.00	2.487	20.44	4.99	6.5	93.5	0.0	-1.60	0.53	0.58	0.74	1.50	8600	1209	6	0	0	0	0	logfile
✔	7WUB	32827	2024-12-30	2022-02-08	3.0	3.30	—	3.3	0.012	0.95	6.0	0.05	15.24	0.01	1.859	45.64	1.96	5.4	94.2	0.4	1.00	0.70	0.81	1.61	3.3	0.003	0.70	0.0	0.04	16.09	0.00	2.419	8.16	1.85	6.0	93.8	0.2	0.61	0.58	0.68	0.84	1.82	63259	7985	24	0	24	0	0	logfile
✔	7R4H	14312	2024-12-31	2022-02-08	2.34	3.05	2.43	2.9	0.006	1.22	1.0	0.06	19.22	0.01	2.119	5.33	3.93	3.7	96.3	0.0	-3.26	0.80	0.83	2.89	2.9	0.003	0.67	0.0	0.04	18.66	0.00	1.887	8.76	2.73	3.1	96.9	0.0	0.57	1.33	0.79	0.83	2.98	16485	2049	9	0	4	0	0	logfile
✔	7WUi	32836	2024-12-30	2022-02-08	3.1	2.72	—	3.1	0.007	1.11	0.0	0.07	13.96	0.01	2.221	25.88	0.29	4.3	95.7	0.0	-2.70	0.53	0.65	2.45	3.0	0.005	0.71	0.0	0.05	15.97	0.00	2.456	20.42	2.30	3.9	96.1	0.0	-1.07	0.55	0.57	0.74	2.37	9666	1225	7	0	0	0	0	logfile
✔	7R4i	14313	2024-12-28	2022-02-08	3.2	2.65	—	3.2	0.019	1.00	2.0	0.05	14.61	0.01	1.819	36.30	0.17	13.1	86.9	0.1	-5.90	0.65	0.65	1.25	3.2	0.015	0.84	3.0	0.05	15.49	0.01	2.052	18.51	1.48	7.3	92.7	0.0	-2.80	0.87	0.69	0.73	1.45	51473	3423	13	0	43	0	24148	logfile
✔	7WU9	32824	2024-12-28	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.63	0.0	0.04	15.51	0.00	2.470	5.48	2.44	2.8	97.2	0.0	0.88	0.79	0.68	0.83	2.34	7369	1030	5	0	0	0	0	logfile
✔	7TX7	26156	2024-12-27	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	21.15	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.75	0.0	0.04	13.11	0.00	2.394	10.79	2.28	1.8	98.2	0.0	3.11	1.33	0.46	0.75	1.62	3203	397	2	0	4	0	0	logfile
✔	7TX6	26155	2024-12-27	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	17.01	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.002	0.66	1.0	0.03	15.22	0.00	2.610	7.01	1.56	2.5	97.5	0.0	3.45	1.18	0.53	0.77	2.49	3169	398	2	0	2	0	0	logfile
✔	7WU7	32823	2024-12-31	2022-02-07	3.85	3.66	4.04	3.8	0.005	0.81	0.0	0.05	14.10	0.00	2.146	18.27	0.01	5.3	94.7	0.1	-1.14	0.70	0.65	0.47	3.8	0.003	0.83	0.0	0.05	16.58	0.00	2.294	16.45	2.81	5.4	94.6	0.0	-0.95	0.54	0.70	0.67	0.13	67031	8727	26	0	4	0	0	logfile
✔	7TW2	26148	2024-12-30	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.003	0.69	0.0	0.04	13.86	0.00	2.403	11.15	0.00	3.3	96.7	0.0	1.44	1.63	0.67	0.77	—	12838	1619	4	0	2	0	0	logfile
✔	7WTo	32793	2024-12-26	2022-02-05	3.5	3.41	—	3.3	0.005	0.84	0.0	0.04	22.20	0.01	2.105	6.35	0.05	7.9	92.0	0.1	-2.03	0.85	0.84	2.16	3.3	0.004	0.66	0.0	0.04	22.17	0.01	2.133	8.27	2.56	9.0	90.9	0.0	-1.20	0.31	0.84	0.84	1.98	44490	2383	17	1200	1	0	0	logfile

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