Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TRP	26100	2024-12-28	2022-01-30	2.4	3.12	2.45	2.9	0.006	0.82	0.0	0.06	11.23	0.01	2.287	2.62	0.21	2.0	98.0	0.0	-0.43	0.75	0.88	4.06	2.9	0.003	0.61	0.0	0.04	14.80	0.00	2.231	8.96	0.86	1.5	98.5	0.0	1.39	1.01	0.73	0.88	3.88	8681	1122	6	0	2	0	0	logfile
✔	7TRQ	26101	2024-12-28	2022-01-30	2.5	3.10	2.20	2.8	0.006	0.83	0.0	0.06	11.80	0.01	2.295	2.26	0.00	2.0	98.0	0.0	-0.50	0.75	0.89	4.72	2.8	0.003	0.62	0.0	0.04	14.22	0.00	2.300	5.86	0.75	1.7	98.3	0.0	1.21	0.98	0.77	0.91	4.18	8723	1129	6	0	2	0	0	logfile
✔	7WSP	32763	2024-12-28	2022-01-30	4.09	4.37	—	4.2	0.008	1.11	0.0	0.06	10.99	0.01	2.212	8.21	0.68	13.2	86.6	0.2	-4.84	0.72	0.80	—	4.2	0.003	0.72	0.0	0.04	11.88	0.00	2.240	7.25	0.11	8.8	91.2	0.0	-2.13	1.38	0.71	0.78	—	7883	1009	4	0	0	0	0	logfile
✔	7WSo	32762	2024-12-27	2022-01-30	3.03	3.25	—	3.3	0.014	1.29	0.0	0.07	10.67	0.01	2.351	3.25	0.85	8.7	91.3	0.0	-2.93	0.63	0.81	3.97	3.2	0.003	0.63	0.0	0.04	14.02	0.00	2.534	3.25	2.41	3.1	96.9	0.0	-0.34	1.24	0.66	0.84	2.95	6204	780	4	0	0	0	0	logfile
✔	7WSN	32761	2024-12-27	2022-01-30	3.31	3.62	—	3.6	0.007	0.83	0.0	0.04	17.55	0.01	2.248	12.89	1.08	5.6	94.4	0.0	-0.44	0.51	0.78	1.65	3.6	0.003	0.63	0.0	0.04	17.52	0.01	2.624	7.54	2.43	3.5	96.5	0.0	2.02	0.50	0.47	0.75	1.54	3567	463	3	0	3	0	0	logfile
✔	7WSH	32758	2024-12-29	2022-01-29	2.89	3.01	—	3.0	0.003	0.45	0.0	0.04	10.06	0.00	2.140	5.01	0.72	1.9	98.1	0.0	-0.03	0.69	0.82	4.30	3.0	0.004	0.58	0.0	0.04	15.41	0.00	2.078	7.23	2.15	2.2	97.8	0.0	0.88	0.84	0.71	0.85	3.50	6457	793	4	0	2	0	0	logfile
✔	7TRK	26099	2024-12-28	2022-01-29	2.8	3.39	2.76	3.2	0.006	0.89	0.0	0.06	11.33	0.01	2.253	2.57	0.11	1.6	98.4	0.0	-1.00	0.73	0.86	4.24	3.1	0.004	0.58	0.0	0.04	14.19	0.00	1.585	12.51	0.87	1.8	98.2	0.0	0.22	0.46	0.74	0.89	3.78	8659	1126	6	0	1	0	0	logfile
✔	7WSi	32759	2024-12-27	2022-01-29	3.32	3.90	—	3.8	0.003	0.67	0.0	0.04	12.25	0.00	2.122	8.82	0.00	7.9	92.1	0.0	-0.23	0.66	0.77	1.76	3.8	0.004	0.79	0.0	0.05	16.03	0.00	2.503	9.96	3.09	8.0	92.0	0.0	-0.20	1.48	0.58	0.79	1.64	5701	743	3	0	0	0	0	logfile
✔	7WSE	32755	2024-12-29	2022-01-29	2.93	3.45	—	3.4	0.002	0.44	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.003	0.61	0.0	0.04	14.89	0.00	2.128	6.69	3.03	2.0	98.0	0.0	0.72	0.81	0.57	0.76	2.51	6431	791	3	0	1	0	0	logfile
✔	7WSG	32757	2024-12-29	2022-01-29	3.03	3.29	—	3.2	0.003	0.52	0.0	0.04	12.82	0.00	2.058	10.65	4.60	2.7	97.3	0.0	-1.05	0.70	0.70	2.71	3.2	0.003	0.60	0.0	0.04	15.54	0.00	2.019	11.05	3.45	3.3	96.7	0.0	-0.43	0.92	0.71	0.74	2.36	6413	787	3	0	1	0	0	logfile
✔	7WSF	32756	2024-12-30	2022-01-29	2.87	3.08	—	3.1	0.003	0.44	0.0	0.04	11.23	0.00	2.016	6.14	3.87	2.7	97.3	0.0	-0.12	0.72	0.81	4.05	3.1	0.003	0.54	0.0	0.04	14.84	0.00	2.062	6.36	1.42	2.2	97.8	0.0	1.14	0.95	0.77	0.88	3.22	7170	879	3	0	1	0	0	logfile
✔	7WSC	32753	2024-12-27	2022-01-28	3.78	4.01	—	4.0	0.013	1.67	5.0	0.10	15.34	0.01	1.600	41.09	4.99	14.7	81.6	3.6	-4.09	0.65	0.78	2.33	4.0	0.004	0.86	0.0	0.05	16.63	0.01	2.523	14.86	6.37	9.4	90.1	0.5	-2.53	0.63	0.63	0.77	2.04	3369	422	4	0	2	0	0	logfile
✔	7WS7	32749	2024-12-27	2022-01-28	3.4	3.83	—	3.7	0.005	0.71	0.0	0.05	14.98	0.00	1.820	9.34	0.00	5.1	94.9	0.0	-1.78	0.71	0.84	3.63	3.7	0.003	0.65	0.0	0.04	15.65	0.00	2.464	7.37	3.01	4.4	95.6	0.0	-1.09	0.96	0.70	0.87	2.81	5209	671	6	0	2	0	0	logfile
✔	7TRC	26085	2024-12-31	2022-01-28	3.3	3.10	—	3.3	0.003	0.64	0.0	0.04	17.83	0.00	2.121	8.21	0.21	4.2	95.8	0.0	-1.82	0.66	0.74	2.50	3.2	0.002	0.61	0.0	0.04	18.95	0.00	2.152	6.65	1.77	3.4	96.6	0.0	-0.72	0.50	0.68	0.77	1.94	14747	1599	10	92	0	0	0	logfile
✔	7WS6	32748	2024-12-27	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.77	0.0	0.05	16.57	0.00	2.517	11.69	3.36	6.1	93.9	0.0	-1.36	0.66	0.67	0.74	2.06	3531	451	3	0	0	0	0	logfile
✔	7TRD	26086	2024-12-30	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	21.93	0.00	2.206	7.50	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	3.3	0.005	0.62	0.0	0.04	21.79	0.00	2.434	5.63	0.99	4.8	95.2	0.0	0.82	0.37	0.80	0.85	2.46	12240	934	3	224	0	0	0	logfile
✔	7WRZ	32738	2024-12-27	2022-01-28	3.26	3.44	—	3.4	0.004	0.62	0.0	0.04	13.60	0.01	2.201	6.90	0.00	5.9	94.1	0.0	-1.03	0.65	0.85	3.98	3.4	0.004	0.59	0.0	0.05	15.40	0.00	2.589	6.90	3.16	5.7	94.1	0.2	-1.04	1.13	0.62	0.86	3.30	3270	414	4	0	2	0	0	logfile
✔	7TRF	26088	2024-12-30	2022-01-28	3.7	4.03	—	3.6	0.005	0.74	0.0	0.05	21.47	0.00	2.206	7.56	0.10	4.6	95.3	0.1	-0.55	0.83	0.81	1.72	3.6	0.005	0.63	0.0	0.04	21.46	0.00	2.378	8.00	1.78	4.1	95.9	0.0	0.93	0.62	0.83	0.83	1.79	13581	1106	5	224	0	0	0	logfile
✔	7TRE	26087	2024-12-30	2022-01-28	3.5	3.56	—	3.5	0.006	0.77	0.0	0.05	21.80	0.01	2.188	7.45	0.11	6.4	93.6	0.0	-0.75	0.77	0.77	2.23	3.5	0.005	0.63	0.0	0.04	21.78	0.00	2.516	7.04	1.49	4.4	95.6	0.0	0.31	0.74	0.78	0.83	2.20	13411	1086	4	224	0	0	0	logfile
✔	7WS2	32741	2024-12-27	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.004	0.71	0.0	0.05	15.77	0.00	2.555	7.36	3.02	5.9	94.1	0.0	-1.73	0.50	0.70	0.82	3.41	3343	431	3	0	0	0	0	logfile

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