Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TRE	26087	2024-12-30	2022-01-28	3.5	3.56	—	3.5	0.006	0.77	0.0	0.05	21.80	0.01	2.188	7.45	0.11	6.4	93.6	0.0	-0.75	0.77	0.77	2.23	3.5	0.005	0.63	0.0	0.04	21.78	0.00	2.516	7.04	1.49	4.4	95.6	0.0	0.31	0.74	0.78	0.83	2.20	13411	1086	4	224	0	0	0	logfile
✔	7WRY	32737	2024-12-27	2022-01-27	3.28	3.44	—	3.4	0.006	0.91	0.0	0.06	16.47	0.01	2.313	3.13	0.29	6.7	93.3	0.0	-2.76	0.58	0.84	4.11	3.4	0.003	0.58	0.0	0.04	15.67	0.00	2.480	6.10	3.16	4.4	95.6	0.0	-1.37	0.40	0.57	0.85	4.06	3267	413	4	0	3	0	0	logfile
✔	7WRQ	32735	2024-12-27	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.29	1.0	0.08	15.48	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.73	0.0	0.04	15.36	0.00	2.525	3.29	1.21	10.0	89.9	0.1	-3.62	0.62	0.86	0.86	2.35	6247	798	5	0	7	0	0	logfile
✔	7WRo	32734	2024-12-27	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.42	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.004	0.71	0.0	0.05	15.04	0.00	2.402	10.97	4.62	5.4	94.6	0.0	-1.35	0.35	0.59	0.78	2.23	3179	412	3	0	0	0	0	logfile
✔	7WRV	32736	2024-12-27	2022-01-27	2.47	2.59	—	2.7	0.003	0.60	0.0	0.04	14.42	0.00	2.061	3.93	0.58	2.9	97.1	0.0	0.27	0.47	0.74	3.28	2.6	0.003	0.58	0.0	0.05	16.11	0.00	2.367	4.09	2.32	4.8	95.2	0.0	-0.70	1.18	0.49	0.78	2.27	6359	427	3	0	0	0	3092	logfile
✔	7WRL	32732	2024-12-27	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	3.6	0.003	0.65	0.0	0.04	16.19	0.00	2.552	6.47	2.54	10.5	89.5	0.0	-3.18	0.46	0.63	0.77	2.93	3251	419	3	0	0	0	0	logfile
✔	7WRJ	32728	2024-12-27	2022-01-26	4.08	4.24	—	4.2	0.009	1.32	0.0	0.07	14.01	0.01	2.255	12.35	0.55	11.5	87.8	0.7	-2.57	0.62	0.70	—	4.1	0.003	0.83	0.0	0.05	13.28	0.01	2.563	14.98	0.00	9.5	90.2	0.2	-2.17	1.38	0.64	0.74	—	3289	418	4	0	2	0	0	logfile
✔	7WR9	32719	2024-12-27	2022-01-26	3.24	3.43	—	3.4	0.006	1.05	1.0	0.06	17.10	0.01	2.350	3.92	1.15	9.6	89.9	0.5	-2.72	0.56	0.81	3.11	3.4	0.003	0.64	0.0	0.04	15.54	0.01	2.447	4.86	2.87	6.9	92.8	0.2	-1.68	0.34	0.56	0.84	2.52	3266	411	5	0	5	0	0	logfile
✔	7WQX	32715	2024-12-27	2022-01-26	2.7	2.26	—	3.2	0.003	0.53	0.0	0.04	11.77	0.00	2.181	9.03	2.56	6.0	94.0	0.0	-3.61	0.73	0.65	2.93	3.2	0.003	0.79	0.0	0.05	14.28	0.01	2.447	12.98	2.56	7.6	92.4	0.0	-2.02	0.79	0.76	0.69	2.49	4022	501	2	0	9	0	0	logfile
✔	7TPT	26063	2024-12-28	2022-01-26	3.9	2.60	3.92	3.8	0.009	0.89	5.0	0.05	14.37	0.00	1.752	10.02	0.45	4.0	96.0	0.0	1.17	0.68	0.61	1.18	2.2	0.005	0.90	3.0	0.05	16.00	0.00	1.900	10.99	3.20	4.7	95.3	0.0	0.42	1.28	0.70	0.65	1.29	50755	7217	67	0	47	0	0	logfile
✔	7WQW	32714	2024-12-27	2022-01-26	3.2	3.57	—	3.4	0.003	0.49	0.0	0.04	10.25	0.00	2.272	8.99	4.47	6.7	93.3	0.0	-4.30	0.77	0.75	2.23	3.5	0.003	0.67	0.0	0.05	14.77	0.00	2.412	9.37	3.53	9.1	90.9	0.0	-2.47	1.39	0.79	0.79	2.31	3983	496	4	0	9	0	0	logfile
✔	7QXA	14196	2024-12-31	2022-01-26	3.2	3.14	3.21	3.2	0.010	1.18	0.0	0.09	22.12	0.01	2.254	0.91	0.28	6.0	93.6	0.4	-3.16	0.69	0.71	3.06	3.2	0.004	0.68	0.0	0.04	21.77	0.00	2.468	6.41	1.30	4.5	95.4	0.1	0.28	0.67	0.75	0.80	2.40	15576	1247	6	265	0	0	0	logfile
✔	7WR7	32717	2024-12-27	2022-01-26	3.1	3.81	—	3.8	0.004	0.61	0.0	0.04	10.28	0.00	2.309	10.13	3.29	9.1	90.9	0.0	-4.53	0.72	0.72	2.80	3.7	0.003	0.66	0.0	0.05	14.32	0.00	2.371	9.23	2.12	10.8	89.2	0.0	-2.74	0.70	0.71	0.74	2.47	3995	496	4	0	10	0	0	logfile
✔	7WRi	32727	2024-12-28	2022-01-26	3.03	3.18	—	3.2	0.003	0.58	1.0	0.04	15.54	0.00	2.099	6.76	2.03	6.0	94.0	0.0	-4.19	0.73	0.80	2.23	3.1	0.003	0.61	0.0	0.04	16.65	0.01	1.984	5.65	2.03	7.0	93.0	0.0	-0.80	0.41	0.75	0.83	1.64	6431	790	4	0	2	0	0	logfile
✔	7WQZ	32716	2024-12-27	2022-01-26	3.7	4.25	—	4.0	0.003	0.54	0.0	0.04	10.73	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.1	0.004	0.85	0.0	0.05	13.95	0.00	2.370	16.72	4.03	15.2	84.8	0.0	-3.01	0.73	0.83	0.78	1.62	3974	496	4	0	9	0	0	logfile
✔	7TQD	26066	2024-12-28	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.002	0.58	0.0	0.04	14.93	0.00	1.083	3.73	0.77	1.9	98.1	0.0	1.20	2.47	0.80	0.83	3.95	8690	1096	4	0	5	0	0	logfile
✔	7WR8	32718	2024-12-27	2022-01-26	3.5	3.74	—	3.8	0.008	1.16	0.0	0.06	13.72	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.004	0.71	0.0	0.05	15.30	0.00	2.511	9.02	2.27	10.3	89.7	0.0	-2.46	0.41	0.50	0.77	2.50	3286	417	4	0	3	0	0	logfile
✔	7TPJ	26057	2024-12-27	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.61	0.0	0.04	16.51	0.00	2.537	7.21	2.00	4.5	95.5	0.0	0.74	1.44	0.58	0.72	1.81	4758	626	3	0	0	0	0	logfile
✔	7TPK	26058	2024-12-27	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.003	0.60	0.0	0.04	14.85	0.00	2.540	2.12	1.44	3.1	96.9	0.0	-0.87	1.23	0.64	0.80	3.09	1484	194	2	0	1	0	0	logfile
✔	7QWM	14189	2024-12-27	2022-01-25	2.76	2.21	2.47	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.005	0.71	0.0	0.05	17.24	0.00	2.529	8.46	1.59	7.3	92.7	0.0	-2.89	0.52	0.37	0.82	6.22	3255	405	3	0	0	0	0	logfile

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