Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YKA	39360	2024-12-27	2024-03-04	3.45	3.88	3.69	3.8	0.006	0.81	0.0	0.05	13.49	0.01	2.076	16.04	0.24	8.6	91.3	0.1	-2.55	0.77	0.75	1.64	3.8	0.003	0.62	0.0	0.04	14.57	0.00	2.423	8.37	0.58	6.2	93.8	0.0	-1.06	1.15	0.79	0.81	1.07	49386	6291	9	0	0	0	0	logfile
✔	8YJY	39353	2024-12-27	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.66	0.0	0.04	17.79	0.00	2.482	7.83	2.64	3.8	96.2	0.0	1.64	0.86	0.66	0.74	1.49	4254	530	2	0	0	0	0	logfile
✔	8YJV	39351	2024-12-29	2024-03-03	3.51	2.76	3.49	3.5	0.007	1.08	0.0	0.06	20.74	0.01	2.317	5.90	0.10	5.0	95.0	0.0	-3.60	0.71	0.75	2.39	3.5	0.004	0.63	0.0	0.04	21.50	0.00	2.544	12.52	2.08	3.4	96.6	0.0	-1.47	0.46	0.72	0.76	1.99	9938	1111	8	65	0	0	0	logfile
✔	8YJW	39352	2024-12-29	2024-03-03	3.55	2.85	3.51	3.5	0.006	1.05	0.0	0.06	20.20	0.01	2.288	5.58	0.00	4.4	95.6	0.0	-3.20	0.72	0.77	2.33	3.5	0.003	0.64	0.0	0.04	20.99	0.00	2.486	11.77	2.06	4.0	96.0	0.0	-0.90	0.51	0.72	0.79	2.13	9946	1116	8	63	0	0	0	logfile
✔	8YJQ	39346	2024-12-29	2024-03-02	3.51	3.25	3.48	3.6	0.005	0.97	0.0	0.05	19.57	0.01	2.366	5.25	0.00	4.4	95.6	0.0	-3.80	0.79	0.79	2.19	3.6	0.003	0.62	0.0	0.04	20.53	0.00	2.464	12.53	1.96	2.8	97.2	0.0	-1.05	1.01	0.80	0.81	2.59	9856	1115	8	59	0	0	0	logfile
✔	8YJL	39344	2024-12-29	2024-03-02	3.51	3.46	3.50	3.5	0.005	1.00	0.0	0.06	19.38	0.01	2.339	5.77	0.00	3.7	96.3	0.0	-2.81	0.77	0.79	2.64	3.5	0.004	0.66	0.0	0.04	20.73	0.00	2.376	13.37	2.58	3.6	96.4	0.0	-1.00	0.94	0.77	0.81	2.67	9853	1115	8	59	0	0	0	logfile
✔	8YJS	39348	2024-12-29	2024-03-02	3.55	3.39	3.54	3.5	0.006	1.03	0.0	0.06	19.68	0.01	2.347	5.87	0.00	5.3	94.7	0.0	-3.62	0.78	0.79	2.45	3.6	0.003	0.63	0.0	0.04	20.58	0.00	2.504	11.48	1.76	3.8	96.2	0.0	-1.16	0.50	0.79	0.81	2.30	9880	1111	8	62	0	0	0	logfile
✔	8YJU	39350	2024-12-29	2024-03-02	3.78	3.49	3.71	3.5	0.005	1.03	0.0	0.06	19.79	0.01	2.324	5.53	0.00	5.1	94.9	0.0	-3.41	0.79	0.77	1.99	3.7	0.003	0.65	0.0	0.04	20.78	0.00	2.429	12.15	1.87	3.4	96.6	0.0	-0.81	0.50	0.81	0.78	2.13	9939	1111	8	65	0	0	0	logfile
✔	8YJR	39347	2024-12-29	2024-03-02	3.51	3.58	3.59	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.7	0.004	0.67	0.0	0.04	21.21	0.00	2.325	11.56	1.35	3.7	96.3	0.0	-0.77	0.49	0.83	0.81	2.54	9962	1113	8	65	0	0	0	logfile
✔	8YJH	39342	2024-12-29	2024-03-01	3.68	3.64	3.65	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.69	0.0	0.04	19.72	0.00	2.485	13.23	1.65	4.0	96.0	0.0	-1.05	1.26	0.82	0.81	1.78	9735	1115	8	53	0	0	0	logfile
✔	8S7D	19766	2024-12-27	2024-02-29	3.2	3.46	3.22	3.5	0.003	0.57	0.0	0.04	19.45	0.00	2.090	13.28	4.70	3.5	96.5	0.0	-0.33	0.55	0.71	1.65	3.5	0.003	0.59	0.0	0.04	19.17	0.00	2.431	11.46	4.05	3.8	96.2	0.0	-0.17	0.35	0.58	0.71	1.87	5488	691	4	0	0	0	0	logfile
✔	8S7E	19768	2024-12-28	2024-02-29	3.4	3.72	3.45	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.002	0.58	0.0	0.04	18.84	0.00	2.361	12.53	2.47	6.2	93.8	0.0	-1.03	0.44	0.57	0.56	0.05	7312	466	2	0	0	0	3648	logfile
✔	8Yi7	39311	2024-12-27	2024-02-29	3.57	3.79	3.54	3.8	0.013	1.60	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.60	0.0	0.04	14.96	0.00	2.476	5.53	1.75	2.6	97.4	0.0	0.30	1.48	0.71	0.84	1.91	5586	697	6	0	4	0	0	logfile
✔	9AUC	43877	2024-12-29	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.003	0.58	0.0	0.04	16.38	0.00	2.464	5.10	1.37	2.2	97.8	0.0	0.88	0.66	0.64	0.83	3.48	10369	1275	11	0	10	16	0	logfile
✔	8YHo	39290	2024-12-27	2024-02-28	2.8	3.60	2.93	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.90	0.0	0.05	15.23	0.00	2.503	12.55	2.26	7.1	92.9	0.0	-0.47	1.36	0.75	0.79	2.35	6206	759	3	0	0	0	0	logfile
✔	8YH3	39280	2024-12-28	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.86	0.0	0.05	16.16	0.00	2.397	15.56	2.41	4.1	95.9	0.0	0.09	1.88	0.67	0.73	0.82	8691	1103	6	0	1	0	0	logfile
✔	8YH6	39282	2024-12-28	2024-02-27	3.62	4.12	—	3.7	0.012	1.43	0.0	0.09	14.43	0.03	2.215	12.85	0.94	4.9	95.0	0.1	-2.37	0.57	0.50	0.66	3.7	0.003	0.89	0.0	0.05	16.18	0.00	2.479	15.56	2.73	4.5	95.5	0.0	-0.58	1.52	0.64	0.64	0.45	8706	1104	6	0	1	0	0	logfile
✔	8YH5	39281	2024-12-28	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.003	0.85	0.0	0.05	16.47	0.00	2.347	13.71	2.94	4.7	95.2	0.1	-0.25	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2024-12-28	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.004	0.87	0.0	0.05	16.01	0.00	2.464	15.62	2.52	4.0	95.9	0.1	-0.16	1.57	0.66	0.72	0.86	8690	1103	6	0	1	0	0	logfile
✔	8YH0	39278	2024-12-28	2024-02-27	2.86	3.63	—	3.3	0.004	0.66	0.0	0.06	13.13	0.00	2.070	8.58	0.00	3.7	96.2	0.1	-0.02	0.68	0.71	1.98	3.4	0.004	0.88	0.0	0.05	15.97	0.01	2.361	11.81	1.78	4.0	95.9	0.1	-0.01	1.59	0.71	0.79	1.39	8693	1103	6	0	1	0	0	logfile

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