Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8S61	19754	2024-12-27	2024-02-26	3.53	3.76	3.50	3.7	0.008	0.63	0.0	0.04	16.57	0.00	1.994	5.65	0.00	6.7	93.3	0.0	-1.96	0.61	0.83	2.65	3.7	0.005	0.64	0.0	0.04	17.15	0.00	2.585	5.15	4.51	6.5	93.5	0.0	-0.34	0.32	0.69	0.85	2.20	3990	502	3	0	1	0	0	logfile
✔	8YG8	39238	2024-12-29	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.40	0.00	2.430	6.12	0.63	8.1	91.9	0.1	-0.66	1.04	0.94	0.88	2.56	11414	1395	8	0	16	0	0	logfile
✔	9AST	43825	2024-12-28	2024-02-26	3.07	2.24	3.08	2.1	0.004	0.70	0.0	0.05	15.90	0.00	0.114	6.75	2.16	2.4	97.2	0.4	0.39	0.74	0.77	2.51	2.1	0.004	0.91	1.0	0.04	16.11	0.00	2.016	5.10	2.46	2.2	97.8	0.1	1.28	0.33	0.74	0.77	2.15	8876	1134	6	0	0	0	0	logfile
✔	8S5U	19750	2024-12-27	2024-02-26	3.28	3.39	3.21	3.3	0.009	0.71	0.0	0.04	15.77	0.01	2.338	5.38	0.47	3.6	96.4	0.0	-0.65	0.65	0.83	3.31	3.3	0.003	0.58	0.0	0.04	16.52	0.00	2.606	4.00	1.42	2.2	97.8	0.0	1.54	0.95	0.70	0.86	3.20	3998	502	3	0	2	0	0	logfile
✔	9ASP	43822	2024-12-30	2024-02-26	3.2	4.18	3.26	3.3	0.004	0.62	0.0	0.04	19.27	0.00	2.196	10.51	0.09	5.1	94.9	0.0	0.10	0.77	0.67	1.49	3.2	0.003	0.56	0.0	0.04	19.45	0.00	2.492	6.84	2.15	4.7	95.3	0.0	0.43	1.21	0.83	0.84	1.51	12227	1256	6	96	4	1	0	logfile
✔	9ATB	43829	2024-12-30	2024-02-26	3.4	3.85	3.47	3.6	0.008	0.79	0.0	0.05	13.58	0.00	2.010	5.66	0.04	4.2	95.8	0.0	0.23	0.44	0.88	1.68	3.6	0.002	0.47	0.0	0.04	15.04	0.00	2.503	2.95	0.84	2.6	97.4	0.0	2.46	0.38	0.43	0.86	0.97	63316	8690	22	0	0	0	0	logfile
✔	9ASM	43819	2024-12-29	2024-02-26	2.8	3.54	2.88	3.1	0.003	0.51	0.0	0.04	17.97	0.00	2.283	3.96	1.04	2.7	97.3	0.0	1.39	0.75	0.63	2.90	3.1	0.003	0.54	0.0	0.04	17.75	0.00	2.257	3.42	0.47	3.1	96.9	0.0	1.87	0.32	0.84	0.90	2.65	11648	1180	6	95	4	2	0	logfile
✔	8YGH	39250	2024-12-30	2024-02-26	2.77	3.71	2.80	3.3	0.003	0.64	0.0	0.04	16.16	0.00	2.230	9.85	1.74	4.3	95.7	0.0	0.53	0.90	0.88	2.42	3.3	0.004	0.64	0.0	0.04	16.42	0.00	2.403	7.64	1.21	4.5	95.5	0.0	0.39	0.30	0.90	0.88	2.28	12244	1510	2	0	0	0	0	logfile
✔	9ASK	43817	2024-12-29	2024-02-26	3.6	4.04	3.67	3.9	0.003	0.60	0.0	0.04	18.52	0.00	2.275	14.03	0.40	4.4	95.6	0.0	-1.03	0.71	0.70	0.95	3.9	0.003	0.66	0.0	0.04	18.97	0.00	2.595	12.02	5.27	4.5	95.4	0.1	-0.64	1.06	0.70	0.70	0.85	11564	1482	2	0	0	0	0	logfile
✔	8YGG	39249	2024-12-30	2024-02-26	2.98	3.85	3.05	3.4	0.003	0.65	1.0	0.04	15.45	0.00	2.233	9.55	2.07	2.7	97.2	0.1	0.81	0.90	0.88	2.30	3.4	0.004	0.63	0.0	0.04	15.89	0.00	2.478	7.48	2.15	3.4	96.6	0.0	1.04	0.33	0.90	0.89	2.18	12096	1490	2	0	0	0	0	logfile
✔	8YGE	39245	2024-12-30	2024-02-26	2.76	3.69	2.79	3.2	0.006	0.59	0.0	0.04	17.86	0.00	1.476	6.74	1.62	4.7	95.2	0.1	0.62	0.90	0.89	2.27	3.2	0.003	0.60	0.0	0.04	18.13	0.00	2.040	6.25	1.32	3.9	96.0	0.1	0.97	0.87	0.90	0.89	2.11	13479	1558	8	40	5	0	0	logfile
✔	9ASQ	43823	2024-12-30	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile
✔	9ASN	43820	2024-12-30	2024-02-26	3.2	4.03	3.21	3.2	0.005	0.61	0.0	0.04	17.26	0.00	2.197	6.23	0.00	3.6	96.4	0.0	1.14	0.77	0.69	2.28	3.2	0.004	0.54	0.0	0.04	17.41	0.00	2.262	4.26	0.66	3.4	96.6	0.0	1.54	0.31	0.83	0.86	2.01	11697	1184	6	97	4	2	0	logfile
✔	9ASJ	43816	2024-12-29	2024-02-26	3.5	3.98	3.57	3.9	0.005	0.71	0.0	0.04	18.82	0.00	2.184	13.04	0.24	4.6	95.4	0.0	-1.01	0.73	0.72	1.19	3.9	0.003	0.67	0.0	0.04	18.91	0.00	2.460	10.56	2.72	5.1	94.7	0.1	-0.14	1.07	0.69	0.70	1.16	11626	1482	4	0	2	0	0	logfile
✔	8YG6	39237	2024-12-29	2024-02-26	2.77	3.81	2.97	3.3	0.003	0.66	0.0	0.05	16.65	0.02	2.027	6.90	0.24	6.9	93.1	0.0	-0.49	0.91	0.86	2.65	3.3	0.005	0.70	0.0	0.04	14.14	0.00	2.589	5.47	1.03	8.7	91.3	0.0	-0.80	1.08	0.92	0.89	3.12	11442	1395	9	0	18	0	0	logfile
✔	8S5W	19752	2024-12-27	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.61	0.0	0.04	17.93	0.00	2.583	6.25	5.94	4.0	96.0	0.0	0.91	0.88	0.61	0.85	2.52	4009	502	3	0	1	0	0	logfile
✔	8YFU	39230	2024-12-28	2024-02-25	4.59	4.78	4.51	4.6	0.003	0.67	0.0	0.04	12.85	0.00	2.081	12.72	0.00	5.3	94.4	0.3	1.47	0.55	0.70	—	4.6	0.003	0.64	0.0	0.04	13.21	0.00	2.374	9.56	0.00	4.3	95.4	0.3	2.21	0.42	0.55	0.71	—	8419	1161	2	0	0	0	0	logfile
✔	8YFW	39231	2024-12-28	2024-02-25	3.65	3.82	3.63	3.7	0.004	0.74	0.0	0.04	15.86	0.01	2.152	13.17	0.28	4.7	95.0	0.3	1.70	0.56	0.70	1.25	3.7	0.003	0.68	0.0	0.04	16.31	0.00	2.485	10.26	3.56	4.0	95.8	0.3	2.49	0.50	0.56	0.71	0.65	8419	1161	2	0	0	0	0	logfile
✔	9ASD	43813	2024-12-27	2024-02-25	3.3	3.51	3.27	3.6	0.011	1.51	4.0	0.09	11.03	0.02	2.348	2.18	1.35	4.4	95.6	0.0	0.14	0.67	0.76	4.80	3.5	0.003	0.67	0.0	0.05	13.67	0.00	2.614	4.18	3.14	2.9	96.8	0.2	0.22	1.18	0.70	0.81	3.30	3013	419	4	0	2	0	0	logfile
✔	8YFX	39232	2024-12-27	2024-02-25	3.56	3.75	3.47	3.7	0.004	0.65	0.0	0.04	16.59	0.00	2.071	9.89	0.28	6.1	93.9	0.0	0.74	0.52	0.71	1.68	3.7	0.003	0.64	0.0	0.04	16.95	0.00	2.485	8.45	1.85	5.2	94.8	0.0	1.59	1.17	0.51	0.70	1.55	6588	792	2	0	0	0	0	logfile

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