Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YFW	39231	2024-12-28	2024-02-25	3.65	3.82	3.63	3.7	0.004	0.74	0.0	0.04	15.86	0.01	2.152	13.17	0.28	4.7	95.0	0.3	1.70	0.56	0.70	1.25	3.7	0.003	0.68	0.0	0.04	16.31	0.00	2.485	10.26	3.56	4.0	95.8	0.3	2.49	0.50	0.56	0.71	0.65	8419	1161	2	0	0	0	0	logfile
✔	8YF4	39210	2024-12-27	2024-02-24	3.41	3.59	3.35	3.6	0.003	0.55	0.0	0.04	17.00	0.00	2.064	7.25	0.86	5.2	94.8	0.0	0.92	0.56	0.73	1.36	3.6	0.003	0.55	0.0	0.04	17.30	0.00	2.493	6.34	4.29	5.0	95.0	0.0	1.78	1.59	0.54	0.73	1.47	6620	786	4	0	2	0	0	logfile
✔	8YFD	39220	2024-12-27	2024-02-24	3.57	3.79	3.57	3.8	0.003	0.68	0.0	0.04	17.76	0.00	2.195	9.97	0.57	6.1	93.5	0.4	0.20	0.56	0.77	1.34	3.8	0.003	0.63	0.0	0.04	17.88	0.00	2.502	8.14	4.26	6.5	93.3	0.3	0.85	1.16	0.56	0.77	1.25	6588	792	2	0	0	0	0	logfile
✔	8S5N	19743	2024-12-26	2024-02-24	3.4	3.65	3.37	3.6	0.008	0.99	0.0	0.07	16.30	0.01	1.208	5.18	0.06	5.6	94.3	0.0	-1.69	0.73	0.76	1.94	3.6	0.007	0.75	0.0	0.05	18.03	0.00	1.914	10.33	1.92	6.4	93.6	0.0	-0.43	0.42	0.71	0.82	1.76	44716	5249	31	129	11	0	0	logfile
✔	8S5i	19736	2024-12-27	2024-02-23	3.1	3.24	3.20	3.3	0.004	0.58	0.0	0.04	13.53	0.00	2.087	3.04	0.58	1.9	97.8	0.2	0.50	0.57	0.65	2.82	3.2	0.003	0.57	0.0	0.04	15.36	0.00	2.381	5.41	1.29	2.5	97.4	0.1	0.88	0.75	0.65	0.77	2.87	47880	3042	12	0	6	0	23952	logfile
✔	8S5H	19735	2024-12-30	2024-02-23	3.7	4.00	3.77	3.8	0.004	0.66	0.0	0.04	14.76	0.01	2.035	6.20	0.00	1.6	98.2	0.2	0.92	0.74	0.74	0.97	3.8	0.005	0.63	0.0	0.04	15.56	0.00	2.377	7.23	1.52	4.7	95.3	0.0	0.30	1.27	0.76	0.79	0.98	63840	4056	16	0	8	0	31936	logfile
✔	8YET	39203	2024-12-29	2024-02-23	4.16	4.38	4.16	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.65	0.0	0.04	16.47	0.00	2.414	8.26	0.00	5.6	94.2	0.2	1.22	1.62	0.63	0.75	—	10102	1206	3	0	2	0	0	logfile
✔	8YF1	39207	2024-12-28	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile
✔	8YEX	39204	2024-12-27	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.66	0.0	0.04	17.34	0.00	2.431	10.73	2.72	5.4	94.6	0.0	1.43	0.46	0.54	0.73	1.08	6532	784	2	0	0	0	0	logfile
✔	8YF0	39206	2024-12-28	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.68	0.0	0.04	16.70	0.00	2.468	12.21	2.47	2.8	97.2	0.0	1.04	0.43	0.54	0.65	0.61	9181	1159	2	0	0	0	0	logfile
✔	8S5K	19738	2024-12-30	2024-02-23	3.8	3.96	3.75	3.9	0.004	0.75	0.0	0.04	14.70	0.01	1.967	7.13	0.15	3.0	96.8	0.1	0.58	0.76	0.72	1.58	3.8	0.006	0.64	0.0	0.04	15.37	0.00	2.254	7.42	1.17	5.1	94.9	0.0	0.25	1.02	0.76	0.72	1.51	63840	4056	16	0	8	0	31936	logfile
✔	8YE9	39191	2024-12-30	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.43	0.00	2.488	4.52	2.17	4.0	96.0	0.0	-0.33	1.30	0.73	0.74	1.81	13559	1448	3	90	0	0	0	logfile
✔	8S4U	19716	2024-12-27	2024-02-22	3.09	3.17	2.95	3.1	0.006	0.65	1.0	0.05	14.85	0.01	2.272	7.16	0.24	4.2	95.8	0.0	-0.73	0.61	0.80	2.33	3.1	0.004	0.63	0.0	0.04	15.60	0.00	2.595	5.53	3.31	2.8	97.2	0.0	1.37	0.33	0.66	0.84	2.58	3980	502	3	0	1	0	0	logfile
✔	8YE6	39190	2024-12-30	2024-02-22	2.95	3.10	2.95	3.1	0.010	1.07	0.0	0.06	15.48	0.01	2.259	3.40	0.16	5.4	94.6	0.0	-4.09	0.71	0.80	4.13	3.1	0.002	0.59	0.0	0.04	18.02	0.00	2.286	5.08	2.16	2.5	97.5	0.0	0.48	0.68	0.72	0.81	2.89	13603	1447	3	92	0	0	0	logfile
✔	8S51	19718	2024-12-26	2024-02-22	3.1	3.72	3.09	3.7	0.008	0.87	1.0	0.08	16.32	0.01	1.887	4.22	0.17	3.5	96.4	0.0	-2.17	0.71	0.77	1.89	3.7	0.003	0.61	0.0	0.04	17.94	0.00	1.902	7.09	1.24	3.6	96.4	0.0	0.44	0.39	0.54	0.69	1.59	44796	5272	31	124	11	0	0	logfile
✔	8S52	19719	2024-12-26	2024-02-22	2.9	3.51	2.86	3.4	0.008	0.90	1.0	0.07	16.26	0.01	1.632	3.41	0.06	3.8	96.2	0.0	0.02	0.72	0.79	2.28	3.4	0.003	0.63	0.0	0.04	17.81	0.00	1.970	7.24	1.18	3.4	96.6	0.0	0.60	0.39	0.65	0.77	2.01	44875	5277	32	127	11	0	0	logfile
✔	8W35	43762	2024-12-27	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W2H	43748	2024-12-27	2024-02-20	2.6	2.65	2.66	2.7	0.009	1.22	0.0	0.05	14.68	0.01	2.013	3.69	0.53	3.3	96.6	0.1	-0.06	0.64	0.80	4.17	2.7	0.004	0.58	0.0	0.04	17.21	0.00	1.884	4.73	2.45	2.1	97.9	0.0	1.10	1.28	0.59	0.81	3.31	46944	3044	8	0	20	0	23240	logfile
✔	8W2G	43747	2024-12-26	2024-02-20	3.0	2.88	3.06	2.9	0.014	0.87	0.0	0.05	16.27	0.00	2.271	1.89	0.00	4.0	96.0	0.0	-0.58	0.60	0.82	3.88	2.9	0.003	0.64	0.0	0.04	16.74	0.00	2.263	4.38	0.63	3.5	96.5	0.0	1.59	0.70	0.57	0.83	3.74	45720	2964	8	0	20	0	22628	logfile
✔	8S35	19688	2024-12-27	2024-02-19	2.9	4.25	3.12	3.6	0.004	0.73	0.0	0.04	18.95	0.00	1.971	9.69	0.82	0.3	99.7	0.0	-0.29	0.90	0.82	1.67	3.6	0.003	0.64	0.0	0.04	19.27	0.00	2.233	11.14	0.98	4.4	95.6	0.0	0.23	0.37	0.90	0.82	1.93	48653	2936	13	112	1	0	23571	logfile

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