Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P13	13154	2024-12-30	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✔	7RAK	24363	2024-12-30	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	7.02	0.00	2.283	4.06	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.002	0.65	0.0	0.04	12.57	0.00	2.520	5.71	1.30	5.4	94.4	0.2	-1.32	1.72	0.68	0.70	0.55	61296	8112	32	0	16	0	0	logfile
✔	7R9U	24331	2024-12-28	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.57	0.0	0.04	9.23	0.00	2.353	6.86	0.00	4.6	95.4	0.0	0.33	2.39	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7R9o	24330	2024-12-28	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.61	0.0	0.04	11.30	0.00	2.416	6.47	0.74	2.8	97.2	0.0	-0.39	3.44	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7R9K	24328	2024-12-28	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.003	0.54	0.0	0.04	8.46	0.00	2.435	6.09	0.00	4.8	95.2	0.0	-0.21	1.78	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7R9M	24329	2024-12-28	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.17	0.00	2.482	4.79	0.25	2.2	97.8	0.0	-0.26	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7RA3	24334	2024-12-29	2021-06-29	3.24	3.47	—	3.3	0.005	0.91	0.0	0.05	13.68	0.00	2.074	6.99	0.35	7.1	92.9	0.0	-1.87	0.69	0.80	2.16	3.3	0.003	0.75	0.0	0.04	15.97	0.00	2.461	10.70	2.99	4.7	95.3	0.0	-0.72	0.84	0.69	0.82	1.44	10802	1381	7	0	0	0	0	logfile
✔	7P00	13140	2024-12-28	2021-06-29	2.71	2.90	—	3.0	0.012	1.68	8.0	0.11	12.35	0.01	2.236	4.97	0.81	3.4	96.6	0.0	-0.50	0.68	0.82	3.71	3.0	0.005	0.65	0.0	0.05	16.00	0.00	2.556	7.24	2.94	2.2	97.8	0.0	0.63	0.68	0.69	0.86	4.08	9110	1144	8	0	2	0	0	logfile
✔	7P02	13141	2024-12-28	2021-06-29	2.87	3.05	—	3.1	0.012	1.51	0.0	0.10	11.73	0.00	2.086	6.28	1.12	4.6	95.4	0.0	-1.72	0.66	0.81	3.20	3.1	0.006	0.73	0.0	0.05	15.45	0.00	2.462	10.00	3.06	2.4	97.6	0.0	0.38	0.72	0.66	0.85	3.67	9062	1138	8	0	2	0	0	logfile
✔	7R9E	24324	2024-12-28	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.003	0.63	0.0	0.04	9.41	0.00	2.404	7.64	0.00	6.0	94.0	0.0	-0.48	2.08	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7F7F	31487	2024-12-30	2021-06-29	3.81	3.37	—	3.8	0.008	1.12	0.0	0.06	13.55	0.01	2.121	6.53	0.31	9.6	90.3	0.1	-5.60	0.64	0.70	2.89	3.7	0.004	0.76	0.0	0.05	14.60	0.00	2.065	12.48	3.54	9.2	90.8	0.0	-3.30	1.20	0.64	0.71	2.08	12076	1497	6	0	8	0	0	logfile
✔	7oZS	13134	2024-12-30	2021-06-28	3.5	4.00	—	3.6	0.004	0.79	0.0	0.05	17.90	0.01	2.282	3.82	0.29	3.7	96.3	0.0	-1.44	0.89	0.85	2.18	3.6	0.002	0.56	0.0	0.04	18.67	0.00	2.328	5.98	1.63	3.3	96.7	0.0	1.85	0.35	0.89	0.85	1.83	12770	1314	7	119	23	0	0	logfile
✔	7oZN	13129	2024-12-28	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.69	0.0	0.05	16.85	0.00	2.348	11.23	2.69	3.2	96.8	0.0	0.03	0.83	0.79	0.78	1.42	54330	6774	32	0	10	0	0	logfile
✔	7oZG	13123	2024-12-27	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.005	0.78	0.0	0.05	15.31	0.00	2.591	15.91	8.98	12.2	87.8	0.0	-4.37	1.63	0.34	0.68	5.01	4960	730	10	0	0	0	0	logfile
✔	7oZo	13130	2024-12-28	2021-06-28	3.8	4.06	3.82	3.9	0.002	0.39	0.0	0.04	14.07	0.00	1.993	4.62	0.00	2.1	97.9	0.0	1.21	0.79	0.71	0.70	3.9	0.004	0.75	0.0	0.05	16.87	0.00	2.412	13.55	2.94	3.9	96.1	0.0	-0.06	1.26	0.83	0.78	1.05	54330	6774	32	0	10	0	0	logfile
✔	7oZP	13131	2024-12-28	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.003	0.72	0.0	0.05	16.92	0.00	2.367	12.22	2.64	2.9	97.1	0.0	0.22	0.97	0.83	0.78	1.25	54330	6774	32	0	10	0	0	logfile
✔	7oZH	13124	2024-12-27	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.004	0.72	0.0	0.05	15.26	0.00	2.556	15.60	7.18	10.0	90.0	0.0	-2.38	1.45	0.40	0.69	0.33	3890	580	10	0	0	0	0	logfile
✔	7oZW	13139	2024-12-28	2021-06-28	3.38	3.17	3.40	3.4	0.005	0.84	0.0	0.05	16.83	0.01	2.276	7.68	0.00	3.7	96.3	0.0	-0.27	0.62	0.70	2.53	3.4	0.003	0.62	0.0	0.04	18.29	0.00	2.411	8.35	1.23	3.5	96.5	0.0	0.00	0.38	0.62	0.73	2.18	8407	961	4	34	1	0	0	logfile
✔	7R91	24322	2024-12-31	2021-06-28	2.83	3.10	2.89	3.1	0.003	0.55	0.0	0.04	14.98	0.00	2.207	5.01	0.19	2.5	97.5	0.0	0.49	0.61	0.86	3.66	3.0	0.004	0.66	0.0	0.05	15.83	0.00	2.182	4.49	0.65	2.7	97.3	0.0	0.85	0.51	0.60	0.89	3.29	14320	1786	7	0	6	0	0	logfile
✔	7R8V	24321	2024-12-31	2021-06-27	2.82	3.03	2.83	3.0	0.003	0.54	0.0	0.04	14.13	0.00	2.028	5.46	0.00	2.7	97.3	0.0	0.86	0.75	0.89	3.97	2.9	0.004	0.61	0.0	0.05	15.31	0.00	1.976	4.85	1.01	2.6	97.4	0.0	1.05	0.30	0.73	0.89	3.74	14845	1855	10	0	10	0	0	logfile

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