Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R88	24311	2024-12-29	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.002	0.58	0.0	0.04	14.97	0.00	2.421	4.56	2.29	4.1	95.9	0.0	1.46	1.01	0.70	0.88	2.68	10787	1368	4	0	0	0	0	logfile
✔	7R8B	24314	2024-12-29	2021-06-26	3.1	3.48	—	3.3	0.002	0.55	0.0	0.04	13.49	0.00	2.103	6.66	1.94	3.5	96.5	0.0	-1.73	0.67	0.85	2.57	3.3	0.002	0.59	0.0	0.04	14.64	0.00	2.509	4.97	3.12	4.5	95.5	0.0	1.07	0.96	0.73	0.91	2.97	10868	1371	6	0	2	0	0	logfile
✔	7R8A	24313	2024-12-29	2021-06-26	2.9	3.05	—	3.0	0.003	0.57	0.0	0.04	13.81	0.00	2.305	6.32	3.39	4.6	95.3	0.1	-1.64	0.66	0.81	2.32	3.0	0.003	0.61	0.0	0.04	15.89	0.00	2.522	4.62	3.30	5.0	95.0	0.0	1.15	1.00	0.75	0.91	3.05	10530	1332	5	0	1	0	0	logfile
✔	7R8D	24316	2024-12-28	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.26	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.3	0.004	0.62	0.0	0.04	15.28	0.00	2.592	6.56	4.08	4.5	95.5	0.0	0.67	0.91	0.63	0.87	2.02	8762	1090	4	0	8	0	0	logfile
✔	7R87	24310	2024-12-29	2021-06-26	3.4	3.29	2.98	3.3	0.002	0.44	0.0	0.04	12.08	0.00	2.317	5.75	0.51	3.2	96.8	0.0	-1.48	0.61	0.80	2.20	3.3	0.003	0.62	0.0	0.04	14.50	0.00	2.464	5.71	2.20	4.4	95.6	0.0	1.13	0.69	0.73	0.91	3.39	10793	1369	4	0	0	0	0	logfile
✔	7R8C	24315	2024-12-28	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.003	0.67	0.0	0.04	15.21	0.00	2.610	7.42	2.36	5.5	94.5	0.0	1.18	0.55	0.71	0.87	1.82	8538	1090	2	0	0	0	0	logfile
✔	7F6G	31479	2024-12-28	2021-06-25	2.9	3.07	—	3.0	0.009	0.98	0.0	0.08	13.90	0.00	2.197	4.74	0.65	3.0	97.0	0.0	-0.57	0.67	0.78	2.90	3.0	0.002	0.58	0.0	0.04	15.80	0.00	2.498	4.97	2.48	2.3	97.7	0.0	1.02	1.11	0.65	0.81	1.99	8697	1061	6	0	7	0	0	logfile
✔	7R7N	24299	2024-12-27	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.31	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.005	0.80	0.0	0.05	14.47	0.00	2.543	8.72	6.28	5.9	94.1	0.0	-1.07	1.32	0.84	0.81	2.58	2790	391	4	0	3	0	0	logfile
✔	7oZ3	13119	2024-12-28	2021-06-25	4.46	4.17	4.34	4.0	0.011	1.27	2.0	0.08	23.03	0.00	2.334	8.45	0.29	4.3	95.7	0.0	0.64	0.85	0.79	—	4.0	0.003	0.60	0.0	0.04	20.68	0.00	2.510	8.13	0.00	3.1	96.9	0.0	1.39	0.77	0.86	0.83	—	8209	804	8	88	2	0	0	logfile
✔	7F6V	31482	2024-12-27	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	13.91	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.63	0.0	0.04	17.38	0.00	2.644	8.93	2.46	3.9	96.1	0.0	4.61	0.84	0.60	0.77	1.07	5314	626	4	0	2	0	0	logfile
✔	7F6i	31481	2024-12-28	2021-06-25	2.8	2.85	—	2.8	0.008	0.92	1.0	0.07	13.56	0.00	2.227	6.36	0.50	3.8	96.2	0.0	0.20	0.71	0.82	2.94	2.8	0.003	0.60	0.0	0.04	15.54	0.00	2.595	6.02	2.11	2.9	97.1	0.0	0.91	0.44	0.71	0.84	1.90	7361	915	6	0	3	0	0	logfile
✔	7F6H	31480	2024-12-28	2021-06-25	2.9	3.07	—	3.1	0.011	0.99	0.0	0.07	14.05	0.00	2.246	6.26	0.87	3.8	96.2	0.0	-0.14	0.65	0.80	3.25	3.1	0.003	0.60	0.0	0.04	15.40	0.00	2.159	4.56	2.23	3.3	96.7	0.0	0.93	1.10	0.61	0.79	2.46	7342	917	6	0	2	0	0	logfile
✔	7oZ1	13118	2024-12-29	2021-06-25	4.0	3.41	—	4.0	0.006	0.92	0.0	0.05	16.76	0.00	2.109	14.20	0.21	7.6	92.4	0.0	-3.23	0.61	0.80	—	4.0	0.004	0.66	0.0	0.04	17.04	0.00	2.454	8.31	2.36	6.7	93.3	0.0	-0.51	1.43	0.61	0.80	—	8942	1088	4	0	12	0	0	logfile
✔	7R7C	24297	2024-12-31	2021-06-24	3.71	3.61	3.17	3.3	0.002	0.53	0.0	0.04	20.67	0.00	2.134	11.12	0.00	4.8	95.2	0.0	-0.30	0.74	0.77	2.08	3.3	0.004	0.64	0.0	0.04	21.26	0.00	2.101	11.16	1.53	5.6	94.4	0.0	-0.20	0.41	0.74	0.78	1.95	14950	1273	11	226	0	0	0	logfile
✔	7F63	31471	2024-12-27	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.004	0.86	0.0	0.05	16.24	0.00	2.372	15.79	2.96	12.4	87.2	0.5	-3.10	1.52	0.65	0.71	1.41	3375	429	3	0	0	0	0	logfile
✔	7R76	24292	2024-12-31	2021-06-24	3.2	3.43	—	3.3	0.008	1.02	1.0	0.06	14.99	0.01	1.995	12.70	0.38	9.0	91.0	0.0	-2.71	0.74	0.79	2.24	3.3	0.003	0.66	0.0	0.04	16.95	0.00	2.157	8.62	2.74	5.9	94.1	0.0	-0.99	0.41	0.74	0.79	1.91	14500	1834	2	0	5	0	0	logfile
✔	7NAN	24275	2024-12-26	2021-06-22	2.8	3.48	—	3.2	0.010	0.73	0.0	0.05	12.42	0.00	2.063	2.67	0.00	1.9	98.0	0.0	-0.69	0.87	0.86	3.65	3.2	0.003	0.70	0.0	0.04	15.56	0.00	2.260	8.32	2.09	2.4	97.6	0.0	0.88	1.81	0.88	0.88	3.01	46360	6244	28	0	0	0	0	logfile
✔	7oXR	13104	2024-12-30	2021-06-22	3.3	3.13	2.94	3.1	0.003	0.58	0.0	0.04	16.46	0.01	1.998	8.45	0.00	2.4	97.6	0.0	-1.36	0.77	0.87	4.32	3.1	0.004	0.62	0.0	0.05	17.98	0.00	2.582	4.46	1.61	2.6	97.4	0.0	-0.43	1.31	0.78	0.91	3.57	13670	1700	10	0	0	0	0	logfile
✔	7R6M	24282	2024-12-28	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.53	0.01	1.758	13.47	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	7R6N	24283	2024-12-28	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.91	0.01	1.762	15.26	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile

• ← previous
• Page 290 of 409
• next →