Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NAo	24276	2024-12-29	2021-06-22	2.9	3.59	—	3.3	0.005	0.73	0.0	0.05	12.92	0.01	2.090	2.54	0.00	1.3	98.6	0.1	1.00	0.87	0.85	3.09	3.3	0.005	0.76	0.0	0.04	15.93	0.00	2.077	8.89	1.97	2.3	97.7	0.0	1.38	1.83	0.87	0.87	2.67	58083	7741	35	0	0	0	0	logfile
✔	7R6N	24283	2024-12-28	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.91	0.01	1.762	15.26	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	7F55	31458	2024-12-28	2021-06-21	3.1	3.51	—	3.5	0.004	0.90	0.0	0.05	11.82	0.01	2.132	8.07	0.34	1.9	98.0	0.1	1.13	0.55	0.66	1.71	3.5	0.003	0.60	0.0	0.04	15.41	0.00	2.400	6.52	3.28	1.8	98.2	0.0	1.91	2.20	0.57	0.70	1.55	8088	1027	8	0	2	2	0	logfile
✔	7NAD	24270	2024-12-26	2021-06-21	3.04	2.90	3.01	3.0	0.002	0.52	0.0	0.04	19.89	0.00	2.159	6.43	0.34	3.4	96.6	0.0	0.96	0.69	0.79	3.04	3.0	0.005	0.58	0.0	0.04	20.30	0.00	2.324	4.42	1.72	4.1	95.9	0.0	0.89	0.29	0.72	0.84	2.83	43123	3338	27	756	1	0	0	logfile
✔	7F54	31457	2024-12-28	2021-06-21	3.0	3.37	—	3.3	0.004	0.89	0.0	0.05	11.93	0.01	2.194	9.38	0.22	1.9	97.9	0.2	1.16	0.57	0.66	1.89	3.3	0.003	0.73	0.0	0.04	15.96	0.00	2.369	9.51	2.47	1.7	98.3	0.0	1.65	1.32	0.57	0.70	1.40	8134	1033	8	0	2	4	0	logfile
✔	7F5B	31464	2024-12-31	2021-06-21	3.9	4.19	—	4.1	0.004	0.82	1.0	0.05	16.74	0.00	2.110	14.96	0.18	8.7	91.2	0.1	-1.83	0.69	0.79	1.36	4.1	0.003	0.73	0.0	0.05	16.33	0.00	2.432	9.73	2.48	7.8	92.2	0.0	-1.08	0.46	0.68	0.80	0.86	15328	1921	11	0	14	0	0	logfile
✔	7F4U	31454	2024-12-28	2021-06-21	4.2	3.10	—	3.0	0.004	0.87	0.0	0.04	14.59	0.01	2.087	18.07	0.00	14.4	85.1	0.6	-5.17	0.65	0.58	—	2.4	0.003	0.81	0.0	0.04	13.46	0.01	2.362	11.72	0.17	11.1	88.8	0.1	-1.04	0.76	0.70	0.71	—	8079	904	4	0	323	0	0	logfile
✔	7F53	31456	2024-12-28	2021-06-21	3.0	3.36	—	3.3	0.008	0.92	0.0	0.06	12.12	0.01	2.230	8.32	0.45	2.1	97.7	0.2	1.14	0.61	0.74	3.38	3.3	0.003	0.59	0.0	0.04	15.91	0.00	2.348	6.29	2.80	1.8	98.2	0.0	1.92	1.26	0.62	0.76	2.94	8153	1034	9	0	1	4	0	logfile
✔	7NA8	24268	2024-12-28	2021-06-20	2.7	3.19	—	3.1	0.007	0.93	5.0	0.06	15.00	0.00	2.112	7.91	0.31	3.1	96.9	0.0	-1.04	0.78	0.87	4.31	3.1	0.003	0.62	0.0	0.04	15.76	0.00	2.540	6.95	0.93	2.7	97.3	0.0	0.44	0.37	0.72	0.87	3.63	8888	1124	6	0	2	0	0	logfile
✔	7NA7	24267	2024-12-28	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	14.70	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.82	0.0	0.06	16.72	0.00	2.430	7.43	2.96	2.4	97.6	0.0	0.46	0.53	0.81	0.82	3.68	9036	1142	7	0	2	0	0	logfile
✔	7N9W	24263	2024-12-27	2021-06-18	4.16	4.20	—	4.2	0.005	1.08	0.0	0.06	14.64	0.01	2.258	5.10	1.40	6.7	93.2	0.1	-5.14	0.63	0.77	—	4.1	0.003	0.74	0.0	0.04	13.86	0.00	2.431	10.96	0.00	6.4	93.6	0.0	-1.20	0.57	0.65	0.78	—	6561	890	2	0	0	0	0	logfile
✔	7F4D	31448	2024-12-28	2021-06-18	3.0	3.72	—	3.4	0.009	1.07	0.0	0.06	12.50	0.01	2.011	3.93	0.00	3.5	96.5	0.0	-0.88	0.69	0.82	3.59	3.4	0.004	0.79	0.0	0.04	15.29	0.00	2.416	10.84	2.30	2.7	97.3	0.0	1.15	0.78	0.69	0.82	2.28	8047	1030	7	0	1	0	0	logfile
✔	7F4F	31449	2024-12-28	2021-06-18	2.9	3.43	—	3.2	0.010	1.09	0.0	0.06	12.60	0.01	2.164	4.69	0.00	3.9	96.1	0.0	-0.89	0.73	0.82	3.96	3.2	0.004	0.74	0.0	0.04	15.43	0.00	2.342	9.56	1.46	2.2	97.8	0.0	1.26	1.31	0.71	0.85	3.19	8881	1138	8	0	2	0	0	logfile
✔	7F4i	31453	2024-12-28	2021-06-18	3.1	3.87	—	3.5	0.009	1.21	0.0	0.06	11.96	0.01	2.169	1.75	0.00	4.3	95.7	0.0	-0.38	0.67	0.82	3.32	3.5	0.003	0.72	0.0	0.04	15.04	0.00	2.362	6.43	1.86	1.5	98.5	0.0	1.46	2.49	0.66	0.83	2.20	8031	1030	7	0	1	0	0	logfile
✔	7N9Q	24259	2024-12-27	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7N9Y	24264	2024-12-28	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7oW8	13095	2024-12-31	2021-06-17	3.5	3.84	3.56	3.8	0.011	1.61	24.0	0.10	17.12	0.01	1.983	10.45	4.22	6.3	93.6	0.2	-3.90	0.60	0.74	1.82	3.9	0.004	0.66	0.0	0.04	18.01	0.00	1.916	7.87	3.19	4.3	95.6	0.1	0.60	0.61	0.64	0.77	1.37	8942	1154	4	0	4	0	0	logfile
✔	7F3U	31441	2024-12-27	2021-06-17	4.0	4.20	—	4.2	0.006	0.89	0.0	0.05	11.59	0.00	2.275	21.93	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.003	0.87	0.0	0.04	15.51	0.00	2.494	12.49	6.94	6.6	93.4	0.0	3.37	1.28	0.59	0.77	—	4274	656	2	0	0	0	0	logfile
✔	7F46	31444	2024-12-27	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.32	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.74	0.0	0.05	13.13	0.01	2.467	14.19	0.00	6.1	93.9	0.0	-1.59	1.12	0.79	0.64	—	6564	842	6	0	2	0	0	logfile
✔	7N9A	24253	2024-12-27	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.66	0.0	0.04	15.05	0.00	2.302	11.34	3.49	3.2	96.8	0.0	-0.79	0.52	0.73	0.70	2.49	2431	312	2	0	0	0	0	logfile

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