Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GMW	51456	2024-12-31	2024-08-29	3.0	3.07	2.90	3.1	0.004	0.63	0.0	0.04	16.81	0.00	1.874	4.69	0.34	2.3	97.7	0.0	0.76	0.69	0.85	3.66	3.1	0.003	0.59	0.0	0.04	17.88	0.00	1.989	6.15	1.83	2.6	97.4	0.0	1.00	0.86	0.71	0.86	3.29	14541	1654	6	56	9	0	0	logfile
✔	9JA5	61290	2024-12-28	2024-08-24	2.7	3.43	2.71	3.3	0.014	1.15	0.0	0.06	14.30	0.01	2.117	13.83	0.00	12.9	87.1	0.0	-2.73	0.62	0.83	2.49	3.3	0.003	0.72	0.0	0.04	17.97	0.00	2.614	8.13	0.96	6.3	93.7	0.0	1.86	0.97	0.54	0.76	1.17	8469	1002	12	0	0	123	0	logfile
✔	9DBY	46728	2024-12-30	2024-08-24	2.8	3.83	2.83	2.8	0.004	0.66	0.0	0.04	26.42	0.00	2.249	7.40	0.23	2.6	97.4	0.0	2.14	0.86	0.74	0.79	2.9	0.005	0.67	0.0	0.04	26.31	0.00	2.488	8.20	1.17	3.3	96.7	0.0	2.12	0.93	0.93	0.90	1.98	14368	1081	17	296	5	0	0	logfile
✔	9JA6	61291	2024-12-27	2024-08-24	4.4	3.40	4.33	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.2	0.003	0.63	0.0	0.04	13.21	0.00	2.392	8.19	0.00	0.9	99.1	0.0	3.07	1.12	0.70	0.77	—	4880	588	4	0	0	0	0	logfile
✔	9DBQ	46724	2024-12-29	2024-08-23	2.9	3.52	2.91	3.5	0.003	0.56	0.0	0.04	12.63	0.00	2.057	2.92	0.10	2.2	97.8	0.0	1.15	0.67	0.73	1.85	3.5	0.003	0.64	0.0	0.04	14.95	0.00	2.417	8.04	2.40	2.9	97.1	0.0	1.97	1.40	0.68	0.74	1.35	10062	1182	4	0	20	0	0	logfile
✔	9GK2	51414	2024-12-30	2024-08-23	2.5	3.25	2.53	2.9	0.004	0.74	8.0	0.04	19.42	0.01	2.075	9.60	4.15	4.1	95.6	0.3	1.13	0.61	0.68	1.58	3.0	0.004	0.70	0.0	0.04	19.00	0.00	2.367	7.78	3.54	3.5	96.3	0.2	1.75	0.94	0.60	0.71	1.56	60516	7776	18	0	0	0	0	logfile
✔	9D9L	46676	2024-12-27	2024-08-21	4.0	3.70	—	3.6	0.012	1.86	15.0	0.10	13.80	0.01	2.522	0.06	0.87	5.4	94.6	0.0	-1.53	0.50	0.65	—	3.6	0.003	0.58	1.0	0.04	15.37	0.00	2.211	3.74	2.12	4.1	95.9	0.0	-1.44	1.70	0.63	0.78	—	49929	3384	12	0	0	0	24441	logfile
✔	9D8P	46645	2024-12-27	2024-08-19	3.2	3.70	3.13	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.53	0.0	0.04	15.74	0.00	2.494	6.27	3.15	2.3	97.7	0.0	0.15	0.18	0.80	0.85	3.21	4073	537	4	0	0	0	0	logfile
✔	9D85	46630	2024-12-28	2024-08-18	3.59	3.91	3.62	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.82	0.0	0.05	21.58	0.00	2.194	18.45	2.93	5.1	94.9	0.0	-1.27	1.60	0.74	0.58	0.76	7201	739	5	65	0	0	0	logfile
✔	9D7K	46607	2024-12-27	2024-08-16	3.0	2.55	3.04	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.005	0.91	0.0	0.05	18.37	0.01	2.494	17.82	2.88	4.8	95.2	0.0	0.36	0.76	0.65	0.72	1.79	2843	359	1	0	0	0	0	logfile
✔	9GG6	51325	2024-12-27	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.72	0.0	0.05	17.52	0.00	2.556	4.34	6.02	9.2	90.8	0.0	-2.30	0.53	0.40	0.89	4.37	2142	288	3	0	0	0	0	logfile
✔	9GG1	51320	2024-12-27	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.69	0.0	0.05	15.90	0.00	2.495	3.02	0.81	3.6	95.5	1.0	-2.36	0.91	0.46	0.92	6.83	3232	428	4	0	0	0	0	logfile
✔	9GG0	51319	2024-12-27	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.58	0.0	0.05	15.92	0.00	2.577	2.45	1.47	2.2	97.8	0.0	-2.14	0.33	0.39	0.88	5.59	2385	321	3	0	0	0	0	logfile
✔	9J4X	61138	2024-12-27	2024-08-10	2.9	3.08	2.89	3.1	0.003	0.52	0.0	0.04	12.98	0.00	2.140	7.96	1.33	4.6	95.4	0.0	0.84	0.60	0.83	3.05	3.1	0.004	0.55	0.0	0.04	15.54	0.00	2.590	6.99	2.36	4.1	95.9	0.0	1.65	0.33	0.61	0.83	2.30	6588	764	4	0	4	0	0	logfile
✔	9J2N	61099	2024-12-27	2024-08-07	3.3	3.54	3.29	3.6	0.006	0.81	0.0	0.04	16.62	0.01	2.233	13.33	0.00	4.9	95.1	0.0	0.45	0.65	0.86	2.03	3.5	0.003	0.61	0.0	0.04	15.56	0.01	2.510	7.14	1.06	3.9	96.1	0.0	1.27	1.37	0.63	0.88	1.65	3584	468	2	0	1	0	0	logfile
✔	9CZL	46420	2024-12-27	2024-08-05	2.9	3.25	2.64	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.004	0.78	0.0	0.05	17.30	0.00	2.580	5.09	1.85	6.2	93.8	0.0	-1.60	1.68	0.44	0.84	4.93	5660	740	10	0	0	0	0	logfile
✔	9CZi	46417	2024-12-27	2024-08-05	3.0	3.03	2.88	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.006	0.71	0.0	0.05	17.71	0.00	2.557	6.07	3.12	7.7	92.3	0.0	-2.24	0.54	0.47	0.87	4.52	5570	730	10	0	0	0	0	logfile
✔	9CZP	46424	2024-12-27	2024-08-05	3.3	3.59	3.27	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.003	0.59	0.0	0.06	16.45	0.00	2.589	8.55	2.80	7.5	92.5	0.0	-1.30	1.62	0.44	0.84	4.57	5020	680	20	0	0	0	0	logfile
✔	9CZN	46422	2024-12-27	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.004	0.62	0.0	0.06	19.10	0.00	2.616	7.65	1.80	4.8	95.2	0.0	-1.06	3.21	0.56	0.88	5.85	5020	680	20	0	0	0	0	logfile
✔	9GCK	51231	2024-12-30	2024-08-02	3.7	4.29	3.78	3.0	0.015	1.89	4.0	0.12	21.02	0.01	1.954	10.65	0.77	5.0	94.7	0.2	-2.69	0.82	0.70	0.99	2.9	0.004	0.74	0.0	0.04	21.01	0.00	2.547	15.60	1.19	3.5	96.4	0.1	0.07	2.65	0.79	0.61	0.85	12298	1287	6	90	0	0	0	logfile

• ← previous
• Page 3 of 408
• next →