Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YUZ	10936	2024-12-29	2020-04-27	2.8	2.85	2.72	2.9	0.006	0.58	1.0	0.05	15.65	0.00	2.235	6.04	2.33	3.8	95.9	0.3	-3.67	0.66	0.85	3.38	2.9	0.003	0.58	0.0	0.04	14.69	0.00	2.444	4.95	1.40	5.6	94.4	0.0	-0.73	1.82	0.67	0.90	3.81	9782	1188	4	0	10	0	0	logfile
✔	6YV1	10940	2024-12-27	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	3.7	0.003	0.67	0.0	0.04	14.34	0.00	2.552	5.48	1.11	2.2	97.8	0.0	1.02	0.62	0.50	0.86	1.20	2496	328	1	0	0	0	0	logfile
✔	7BZ2	30249	2024-12-28	2020-04-26	3.82	3.99	—	3.9	0.004	0.68	0.0	0.05	15.12	0.00	2.101	12.35	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.003	0.69	0.0	0.04	16.81	0.00	2.519	7.77	3.00	4.4	95.6	0.0	-2.37	1.59	0.71	0.77	1.32	7393	978	6	0	1	0	0	logfile
✔	6YTQ	10921	2024-12-26	2020-04-24	4.02	4.09	3.98	4.0	0.006	0.68	0.0	0.04	13.94	0.00	2.345	6.64	0.00	3.3	96.7	0.0	-0.58	0.68	0.83	—	4.1	0.003	0.63	0.0	0.04	13.83	0.00	2.521	6.09	0.02	3.5	96.5	0.0	2.79	1.49	0.67	0.83	—	45782	5874	22	0	0	0	0	logfile
✔	6YTL	10919	2024-12-26	2020-04-24	3.82	3.67	3.70	3.7	0.005	0.76	0.0	0.05	13.89	0.01	1.929	9.85	0.00	3.4	96.6	0.0	-0.15	0.66	0.82	1.92	3.8	0.003	0.60	0.0	0.04	15.66	0.00	2.479	6.56	3.11	1.8	98.2	0.0	3.09	0.58	0.69	0.83	1.51	45782	5874	22	0	0	0	0	logfile
✔	6YSZ	10911	2024-12-31	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.002	0.55	0.0	0.03	17.58	0.00	2.468	7.09	3.13	1.1	98.9	0.0	2.42	0.99	0.80	0.79	1.25	15192	1896	6	0	0	0	0	logfile
✔	6YSF	10895	2024-12-29	2020-04-22	3.4	3.49	3.31	3.5	0.004	0.77	0.0	0.04	15.31	0.00	1.874	13.85	0.90	8.5	91.5	0.0	-3.39	0.67	0.80	2.12	3.5	0.004	0.81	0.0	0.05	17.44	0.00	2.402	12.84	3.06	7.9	92.1	0.0	-0.17	0.68	0.67	0.81	1.34	10220	1327	7	0	0	0	0	logfile
✔	6YSL	10899	2024-12-29	2020-04-22	3.5	3.58	3.41	3.5	0.006	1.17	0.0	0.06	12.21	0.01	2.232	5.93	0.47	9.0	90.9	0.1	-4.73	0.58	0.72	1.19	3.5	0.003	0.90	0.0	0.05	16.96	0.00	2.429	12.40	3.18	6.7	93.3	0.0	-1.17	0.80	0.60	0.71	0.95	10128	1324	7	0	0	0	0	logfile
✔	6YS8	10893	2024-12-27	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.003	0.88	0.0	0.05	17.12	0.00	2.412	13.42	3.40	5.4	93.5	1.1	0.75	1.07	0.65	0.82	0.73	5624	737	7	0	0	0	0	logfile
✔	7BY0	30239	2024-12-30	2020-04-21	4.5	5.50	—	4.5	0.008	0.97	0.0	0.05	31.23	0.01	1.950	11.25	0.15	3.1	96.9	0.0	-3.59	0.92	0.87	—	4.5	0.005	0.73	0.0	0.04	30.73	0.01	2.312	19.14	0.00	5.0	95.0	0.0	0.31	1.28	0.92	0.87	—	12693	868	12	286	0	0	0	logfile
✔	6YS5	10892	2024-12-31	2020-04-21	3.0	3.05	2.83	3.0	0.007	0.72	0.0	0.05	22.53	0.01	1.880	5.29	7.15	7.4	92.6	0.0	-3.10	0.80	0.87	2.82	3.0	0.006	0.69	0.0	0.04	22.32	0.01	1.862	3.94	5.69	7.1	92.9	0.0	-0.29	0.33	0.80	0.90	2.92	16864	852	13	477	24	0	0	logfile
✔	6WM0	21846	2024-12-27	2020-04-20	3.52	3.75	—	3.7	0.003	0.59	0.0	0.04	14.11	0.00	2.281	6.43	0.00	2.6	97.4	0.0	-0.89	0.74	0.81	2.63	3.7	0.004	0.65	0.0	0.05	16.08	0.00	2.542	6.55	1.88	4.2	95.8	0.0	3.10	2.37	0.73	0.81	2.41	4105	510	3	0	5	0	0	logfile
✔	7BXU	30238	2024-12-30	2020-04-20	3.7	3.82	—	3.8	0.008	1.17	2.0	0.07	11.21	0.01	1.540	7.78	0.43	8.8	91.2	0.0	-4.33	0.73	0.87	3.01	3.8	0.003	0.67	0.0	0.04	13.95	0.00	2.469	3.76	1.88	7.1	92.9	0.0	-0.77	0.50	0.69	0.86	2.30	13444	1752	6	0	14	0	0	logfile
✔	6WLV	21843	2024-12-27	2020-04-20	3.45	3.67	—	3.6	0.004	0.56	0.0	0.04	13.21	0.00	2.211	9.21	0.00	4.7	95.3	0.0	-0.61	0.80	0.82	2.72	3.6	0.003	0.61	0.0	0.04	15.19	0.00	2.414	6.90	1.17	2.8	97.2	0.0	2.40	1.25	0.79	0.83	2.63	4111	512	3	0	3	0	0	logfile
✔	7BXT	30237	2024-12-31	2020-04-20	4.2	4.32	4.13	4.2	0.010	0.94	0.0	0.05	28.65	0.01	1.659	17.10	0.39	6.4	93.6	0.0	-4.26	0.84	0.85	—	4.2	0.004	0.69	0.0	0.04	27.13	0.00	2.360	11.70	0.19	5.7	94.3	0.0	-0.36	1.67	0.84	0.84	—	15696	1201	14	290	0	0	0	logfile
✔	7BX7	30235	2024-12-27	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.56	0.0	0.04	14.00	0.00	2.482	3.47	1.15	6.2	93.8	0.0	-5.27	0.55	0.40	0.78	5.99	1896	270	6	0	0	0	0	logfile
✔	7BX8	30236	2024-12-31	2020-04-17	3.6	3.87	3.75	3.8	0.008	1.31	0.0	0.08	13.92	0.01	2.299	10.31	1.37	11.6	88.4	0.1	-4.54	0.66	0.80	1.62	3.8	0.004	0.77	0.0	0.04	15.38	0.00	2.483	10.71	4.35	6.9	93.1	0.0	-1.15	1.73	0.67	0.83	1.63	16304	2232	4	0	0	0	0	logfile
✔	6WKY	21813	2024-12-28	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.92	0.0	0.04	15.81	0.00	2.361	15.58	0.00	0.2	99.8	0.0	-1.18	2.30	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6WL0	21814	2024-12-29	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	1.00	0.0	0.04	14.71	0.00	2.340	20.05	0.18	0.1	99.9	0.0	0.45	1.64	0.79	0.86	—	11480	1476	41	0	0	0	0	logfile
✔	6WKX	21812	2024-12-30	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.70	0.0	0.04	16.87	0.00	2.498	5.84	0.17	0.0	100.0	0.0	4.63	1.00	0.77	0.88	—	12915	1575	105	0	0	0	0	logfile

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