Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WKX	21812	2024-12-30	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.70	0.0	0.04	16.87	0.00	2.498	5.84	0.17	0.0	100.0	0.0	4.63	1.00	0.77	0.88	—	12915	1575	105	0	0	0	0	logfile
✔	6WKT	21708	2024-12-27	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.002	0.53	0.0	0.03	15.20	0.00	2.587	7.85	0.00	3.8	96.2	0.0	4.44	1.35	0.63	0.74	3.44	3152	424	4	0	0	0	0	logfile
✔	6YoV	10864	2024-12-30	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.19	0.01	2.395	0.86	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.9	0.004	0.75	0.0	0.04	26.34	0.00	2.198	10.97	2.89	1.8	98.2	0.0	1.99	0.91	0.89	0.86	1.88	12298	898	18	262	8	0	0	logfile
✔	6Yo0	10862	2024-12-29	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.97	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.003	0.56	0.0	0.04	13.59	0.00	1.868	5.12	0.60	4.4	95.6	0.0	0.85	0.79	0.84	0.89	3.10	55780	3598	17	0	10	0	28102	logfile
✔	7BWA	30231	2024-12-29	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.05	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.004	0.79	0.0	0.05	14.15	0.00	2.026	17.59	0.00	9.4	90.6	0.0	-3.09	1.67	0.79	0.60	—	11670	1444	4	0	0	0	0	logfile
✔	7BW8	30230	2024-12-27	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.004	0.96	0.0	0.05	18.44	0.01	2.408	19.05	4.72	13.5	86.5	0.0	-3.50	2.05	0.69	0.64	0.41	6021	737	3	0	0	0	0	logfile
✔	6WJJ	21694	2024-12-29	2020-04-13	3.8	3.85	—	3.8	0.008	1.05	3.0	0.06	10.44	0.01	2.163	4.56	0.89	5.8	94.2	0.0	-3.43	0.74	0.81	2.71	3.8	0.003	0.57	0.0	0.04	14.38	0.00	2.080	6.29	1.99	3.1	96.9	0.0	-0.05	1.30	0.75	0.83	1.78	56908	7076	24	0	24	0	0	logfile
✔	7BW7	30229	2024-12-28	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.004	0.83	0.0	0.05	15.36	0.00	2.381	17.20	0.00	14.6	85.4	0.0	-4.11	0.74	0.71	0.66	—	8824	1091	3	0	0	0	0	logfile
✔	6WiK	21684	2024-12-27	2020-04-10	3.4	4.22	—	3.8	0.012	1.27	0.0	0.08	13.63	0.01	2.078	32.26	2.55	10.5	87.3	2.2	-3.88	0.68	0.67	1.12	3.9	0.005	0.89	0.0	0.04	16.53	0.00	2.454	16.00	5.65	6.4	93.3	0.4	-0.01	1.03	0.71	0.77	1.08	6078	859	3	0	0	0	0	logfile
✔	6WiV	21685	2024-12-30	2020-04-10	3.3	3.32	—	3.3	0.006	0.79	0.0	0.05	13.86	0.00	2.042	21.71	0.08	3.1	96.9	0.0	-1.94	0.79	0.81	2.67	3.4	0.003	0.61	0.0	0.04	14.62	0.00	2.406	7.49	1.70	2.5	97.5	0.0	1.40	1.97	0.80	0.83	2.35	11206	1352	4	0	17	0	0	logfile
✔	6YN5	10849	2024-12-29	2020-04-10	2.7	2.87	2.79	2.8	0.008	0.84	0.0	0.05	11.70	0.01	2.247	3.71	0.03	1.9	98.1	0.0	-0.33	0.84	0.88	4.96	2.8	0.005	0.61	0.0	0.05	13.93	0.00	2.491	5.60	0.97	1.7	98.3	0.0	1.38	0.31	0.86	0.90	4.24	56994	7110	10	0	0	0	0	logfile
✔	6Wi9	21683	2024-12-28	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.96	0.00	2.395	11.17	0.11	5.2	94.8	0.0	-0.70	0.72	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7BV2	30210	2024-12-28	2020-04-09	2.5	2.82	—	2.8	0.005	0.74	0.0	0.05	15.37	0.00	1.942	5.42	0.00	1.3	98.7	0.0	0.03	0.77	0.83	4.56	2.8	0.002	0.53	0.0	0.04	16.39	0.00	2.262	5.07	1.02	1.4	98.6	0.0	0.99	1.11	0.68	0.81	3.54	8630	1011	8	25	6	5	0	logfile
✔	7BV1	30209	2024-12-28	2020-04-09	2.8	2.97	—	3.0	0.005	0.82	0.0	0.06	15.13	0.00	2.266	6.96	0.00	4.3	95.7	0.0	-1.91	0.62	0.75	2.16	3.0	0.004	0.63	0.0	0.04	17.08	0.00	2.472	5.81	2.59	4.2	95.8	0.0	-0.84	1.43	0.64	0.81	2.64	8799	1112	5	0	2	0	0	logfile
✔	6WHC	21671	2024-12-28	2020-04-07	3.4	3.86	3.36	3.7	0.004	0.79	0.0	0.05	14.51	0.01	2.238	6.38	0.00	4.0	96.0	0.0	-4.67	0.83	0.82	1.97	3.7	0.003	0.66	0.0	0.04	15.89	0.00	2.498	7.73	1.44	3.4	96.6	0.0	-0.50	1.01	0.82	0.83	1.50	8709	1126	6	0	0	0	0	logfile
✔	6WHA	21669	2024-12-28	2020-04-07	3.36	3.16	—	3.4	0.012	1.20	2.0	0.08	13.68	0.01	2.284	6.97	2.99	4.1	95.9	0.0	-0.19	0.78	0.85	2.64	3.3	0.003	0.62	0.0	0.04	15.24	0.00	2.510	2.83	2.34	2.5	97.5	0.0	1.12	0.47	0.77	0.86	2.32	7888	1074	6	0	1	0	0	logfile
✔	6YLE	10836	2024-12-31	2020-04-07	3.3	3.50	3.37	3.4	0.009	1.05	0.0	0.06	16.80	0.01	1.910	4.05	0.28	1.5	98.5	0.0	-3.17	0.72	0.82	3.17	3.4	0.006	0.73	0.0	0.05	17.24	0.00	2.204	6.60	2.60	6.1	93.9	0.0	-0.28	0.70	0.74	0.85	2.64	15345	1930	5	0	0	0	0	logfile
✔	6YKP	10829	2024-12-29	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.72	0.0	0.04	15.48	0.00	2.354	6.36	1.57	2.9	97.0	0.1	0.60	1.07	0.60	0.86	3.17	10190	1326	9	0	0	7	0	logfile
✔	6YKM	10828	2024-12-29	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.59	0.0	0.04	14.90	0.00	2.605	8.38	1.81	2.5	97.5	0.0	0.84	1.07	0.68	0.88	2.55	10434	1357	10	0	0	8	0	logfile
✔	6YKR	10830	2024-12-29	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.33	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.67	0.0	0.04	15.87	0.00	2.593	6.36	1.30	2.3	97.7	0.0	1.02	1.14	0.67	0.88	3.40	10189	1326	9	0	0	6	0	logfile

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