Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BTW	30189	2024-12-29	2020-04-03	2.9	3.04	—	3.1	0.008	1.12	3.0	0.06	18.11	0.01	1.556	6.99	9.60	8.0	91.6	0.4	-5.22	0.65	0.76	3.14	3.1	0.003	0.70	0.0	0.04	17.95	0.00	2.127	8.65	1.83	7.5	92.5	0.0	-1.27	0.73	0.63	0.79	2.42	10246	1280	4	0	0	0	0	logfile
✔	6WFQ	21652	2024-12-27	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.90	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.85	0.0	0.04	19.05	0.00	2.455	12.61	2.93	5.4	94.6	0.0	-0.11	0.97	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	7BTX	30190	2024-12-29	2020-04-03	2.8	2.99	—	3.0	0.008	1.09	2.0	0.06	14.93	0.01	2.280	4.49	0.26	8.1	91.1	0.7	-4.94	0.68	0.86	4.33	3.0	0.003	0.69	0.0	0.04	16.91	0.01	2.338	6.81	1.50	7.7	92.0	0.2	-0.77	0.52	0.66	0.87	3.80	10168	1268	4	0	0	0	0	logfile
✔	7BTY	30191	2024-12-29	2020-04-03	3.2	3.16	—	3.2	0.010	1.15	2.0	0.07	15.86	0.01	2.247	5.43	0.70	10.2	89.1	0.6	-5.57	0.66	0.79	2.94	3.2	0.004	0.74	0.0	0.04	17.01	0.01	2.571	7.94	3.79	8.6	91.1	0.2	-2.16	0.49	0.70	0.81	2.62	10168	1268	4	0	0	0	0	logfile
✔	6YJ5	10816	2024-12-27	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.75	0.0	0.05	15.14	0.01	2.499	8.18	3.68	10.9	89.1	0.0	-2.20	0.73	0.51	0.73	2.60	2061	306	1	0	0	0	0	logfile
✔	7BTR	30183	2024-12-31	2020-04-02	4.54	4.80	—	4.5	0.007	1.23	0.0	0.06	12.09	0.01	2.037	10.84	0.99	14.4	85.6	0.0	-4.59	0.88	0.78	—	4.5	0.003	0.82	0.0	0.05	12.86	0.00	2.365	16.87	0.00	12.1	87.9	0.0	-2.49	1.73	0.89	0.80	—	16737	2087	6	0	0	0	0	logfile
✔	7BTi	30179	2024-12-31	2020-04-01	3.6	3.69	—	3.6	0.010	0.86	0.0	0.06	17.05	0.01	2.083	5.58	10.93	5.7	94.1	0.2	-4.46	0.75	0.88	2.31	3.6	0.004	0.67	0.0	0.05	15.77	0.00	1.975	6.40	2.57	6.2	93.8	0.0	-1.27	0.53	0.75	0.88	1.99	14650	1860	13	0	10	0	0	logfile
✔	7BTF	30178	2024-12-29	2020-04-01	2.95	3.30	3.02	3.2	0.009	0.73	0.0	0.05	12.87	0.00	2.262	6.36	0.00	7.0	93.0	0.0	-2.91	0.77	0.89	4.15	3.2	0.003	0.57	0.0	0.04	15.21	0.00	2.454	4.64	1.86	4.4	95.6	0.0	-0.30	0.94	0.77	0.90	3.56	9685	1213	5	0	2	0	0	logfile
✔	7BTE	30177	2024-12-31	2020-04-01	4.2	4.34	—	4.2	0.006	0.70	0.0	0.05	15.02	0.00	1.835	13.89	13.76	12.7	87.3	0.0	-5.33	0.76	0.90	—	4.2	0.002	0.68	0.0	0.04	12.43	0.00	1.958	7.90	0.00	4.7	95.3	0.0	-1.19	1.50	0.75	0.88	—	14814	1894	13	0	10	0	0	logfile
✔	6WDN	21642	2024-12-30	2020-04-01	3.2	4.00	—	3.8	0.005	0.74	2.0	0.05	15.07	0.01	2.166	14.85	0.52	7.1	92.9	0.0	-5.36	0.74	0.82	1.98	3.8	0.003	0.75	1.0	0.04	17.31	0.00	2.263	8.95	2.74	4.4	95.6	0.0	-0.98	0.65	0.74	0.82	1.88	12612	1540	10	0	0	0	0	logfile
✔	7BSQ	30164	2024-12-29	2020-03-31	3.2	3.30	—	3.3	0.014	1.30	2.0	0.06	16.72	0.01	1.841	35.93	6.31	15.9	84.0	0.1	-5.29	0.64	0.86	3.13	3.3	0.003	0.88	0.0	0.04	17.05	0.00	2.052	8.37	2.91	5.7	94.3	0.0	-1.09	0.46	0.66	0.87	3.04	11024	1352	5	0	9	0	0	logfile
✔	7BSP	30163	2024-12-29	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	15.68	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.78	0.0	0.04	16.23	0.00	2.500	11.15	3.07	6.9	93.1	0.0	-2.38	0.62	0.68	0.87	—	11010	1352	5	0	5	0	0	logfile
✔	7BT7	30171	2024-12-31	2020-03-31	3.8	3.86	—	3.8	0.004	0.66	0.0	0.05	13.36	0.00	1.970	12.49	8.39	7.7	92.3	0.0	-4.13	0.72	0.87	2.58	3.8	0.003	0.68	0.0	0.04	14.47	0.00	1.951	9.20	3.03	4.9	95.1	0.0	-1.01	2.42	0.72	0.87	2.10	14530	1850	10	0	10	0	0	logfile
✔	6WCZ	21618	2024-12-29	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.60	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	4.0	0.003	0.75	0.0	0.04	15.09	0.00	2.211	11.76	3.02	6.0	94.0	0.0	-1.49	1.73	0.83	0.77	—	9894	1231	3	0	2	0	0	logfile
✔	7BSW	30169	2024-12-29	2020-03-31	3.9	3.97	—	3.9	0.005	1.22	0.0	0.21	16.59	0.01	1.719	37.17	0.69	7.4	92.6	0.0	-5.22	0.66	0.79	2.01	3.9	0.003	0.69	0.0	0.04	16.55	0.00	2.514	7.02	3.44	5.7	94.3	0.0	-1.29	0.62	0.66	0.81	1.57	9329	1139	4	0	7	0	0	logfile
✔	7BSS	30165	2024-12-28	2020-03-31	3.3	3.44	—	3.4	0.010	1.23	0.0	0.07	17.07	0.01	1.849	14.06	5.60	9.0	91.0	0.0	-5.79	0.62	0.86	3.74	3.4	0.003	0.66	0.0	0.04	16.80	0.00	1.089	7.60	3.44	5.2	94.8	0.0	-1.24	1.26	0.66	0.89	3.02	9289	1140	4	0	7	0	0	logfile
✔	6WCB	21605	2024-12-29	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.004	0.54	0.0	0.04	15.42	0.00	2.356	3.10	1.13	2.1	97.9	0.0	2.81	1.28	0.54	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	6WC9	21603	2024-12-29	2020-03-30	2.64	2.43	—	2.6	0.006	0.54	0.0	0.04	15.75	0.00	1.949	3.96	2.10	3.9	96.1	0.0	-0.42	0.53	0.77	3.24	2.6	0.003	0.54	0.0	0.04	17.30	0.00	2.459	2.76	3.07	1.7	98.3	0.0	2.63	0.74	0.64	0.82	3.51	11713	734	6	0	7	106	5904	logfile
✔	6WCC	21606	2024-12-29	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.004	0.54	0.0	0.03	16.00	0.00	2.495	5.16	1.61	2.5	97.5	0.0	4.00	1.30	0.52	0.79	1.98	11629	734	6	0	5	12	5908	logfile
✔	6WCA	21604	2024-12-29	2020-03-30	3.03	3.15	—	3.1	0.003	0.61	0.0	0.04	15.59	0.00	2.102	8.00	1.94	3.0	97.0	0.0	-0.15	0.54	0.77	2.04	3.2	0.003	0.55	0.0	0.04	15.88	0.00	2.444	5.68	2.26	2.3	97.7	0.0	3.36	0.61	0.53	0.79	1.96	11645	734	6	0	5	26	5910	logfile

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