Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WBY	21601	2024-12-28	2020-03-27	3.4	3.73	3.45	3.6	0.010	1.04	0.0	0.06	12.68	0.01	2.042	3.28	0.32	6.3	93.6	0.1	-5.12	0.78	0.87	3.21	3.6	0.003	0.63	0.0	0.04	13.66	0.00	2.208	4.21	1.72	4.6	95.4	0.0	-0.34	0.36	0.76	0.87	2.47	9156	1250	2	0	2	0	0	logfile
✔	6WBX	21600	2024-12-28	2020-03-27	3.5	3.82	3.55	3.7	0.012	1.07	0.0	0.06	13.49	0.01	2.190	4.07	0.11	7.9	92.0	0.1	-5.51	0.77	0.87	3.70	3.7	0.003	0.62	0.0	0.04	14.08	0.00	2.209	4.95	1.43	4.9	95.1	0.0	-1.45	0.41	0.72	0.84	2.82	9170	1264	2	0	2	0	0	logfile
✔	6WB8	21586	2024-12-31	2020-03-26	3.24	3.55	—	3.5	0.011	0.91	0.0	0.05	8.89	0.00	2.124	16.94	0.00	5.9	93.9	0.2	-3.70	0.73	0.79	3.73	3.5	0.003	0.62	0.0	0.04	14.99	0.00	2.502	7.24	1.38	3.7	96.1	0.2	1.14	1.65	0.71	0.85	2.97	14888	1852	8	0	12	0	0	logfile
✔	6WB2	21585	2024-12-28	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	16.51	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.58	0.0	0.04	16.75	0.00	2.143	8.44	0.17	3.4	96.6	0.0	-0.37	0.64	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	6WBi	21590	2024-12-30	2020-03-26	4.39	4.98	—	3.3	0.015	0.91	0.0	0.04	10.97	0.01	2.117	12.12	1.00	4.8	95.1	0.0	-0.82	0.70	0.80	—	3.3	0.003	0.64	0.0	0.04	10.21	0.00	2.476	5.35	0.00	3.9	96.1	0.0	2.93	0.53	0.72	0.84	—	13018	2284	8	0	1	0	0	logfile
✔	6WB1	21584	2024-12-28	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	17.21	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.003	0.60	0.0	0.04	17.38	0.00	2.285	7.54	0.00	3.9	96.1	0.0	-0.64	0.71	0.87	0.83	—	8235	944	4	75	0	0	0	logfile
✔	6WAZ	21582	2024-12-28	2020-03-26	4.1	4.33	—	4.2	0.004	0.79	0.0	0.06	17.88	0.01	1.931	9.98	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.63	0.0	0.04	17.26	0.00	2.440	6.92	0.00	4.7	95.3	0.0	-1.22	0.75	0.83	0.83	—	8537	955	4	54	0	0	0	logfile
✔	6WB0	21583	2024-12-28	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	16.40	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.004	0.65	0.0	0.04	16.80	0.00	2.092	9.58	0.00	5.6	94.4	0.0	-1.79	1.29	0.81	0.79	—	8518	948	4	77	0	0	0	logfile
✔	6WB9	21587	2024-12-31	2020-03-26	3.0	3.13	—	3.1	0.006	0.83	0.0	0.05	13.62	0.01	1.983	10.26	0.87	7.7	92.3	0.0	-3.47	0.66	0.78	3.45	3.1	0.003	0.61	0.0	0.04	16.27	0.00	2.507	9.33	2.11	7.2	92.8	0.0	-0.13	0.56	0.66	0.80	3.06	14507	1771	12	0	8	0	0	logfile
✔	6YE4	10789	2024-12-28	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	15.50	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.53	0.00	2.584	5.02	1.11	2.1	97.9	0.0	4.11	0.92	0.65	0.85	1.50	9140	1180	10	0	5	0	0	logfile
✔	6YEG	10792	2024-12-31	2020-03-24	4.0	3.79	4.25	3.5	0.006	1.08	0.0	0.05	12.04	0.01	2.293	11.31	0.85	15.4	84.4	0.2	-5.46	0.46	0.58	—	3.5	0.004	0.77	0.0	0.04	14.58	0.00	2.439	13.27	1.58	13.0	87.0	0.0	-4.46	1.27	0.55	0.68	—	15756	2064	12	0	0	0	0	logfile
✔	7BP3	30143	2024-12-27	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.003	0.85	0.0	0.04	18.31	0.00	2.473	13.17	3.59	6.7	93.3	0.0	-0.33	1.24	0.49	0.74	1.13	6080	788	2	0	0	0	0	logfile
✔	6W8P	21577	2024-12-27	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	14.92	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	3.9	0.004	0.79	0.0	0.04	18.35	0.00	2.408	12.52	9.60	9.6	90.4	0.0	-0.11	1.53	0.57	0.79	0.78	6509	844	4	0	3	0	0	logfile
✔	6W8o	21576	2024-12-27	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.04	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.2	0.004	0.95	0.0	0.05	18.01	0.00	2.495	15.40	7.76	5.7	94.3	0.0	0.48	1.15	0.55	0.79	1.58	6332	832	2	0	0	0	0	logfile
✔	6W8N	21575	2024-12-27	2020-03-20	3.2	3.39	—	3.3	0.007	0.77	0.0	0.05	16.69	0.00	2.244	12.74	8.14	7.1	92.9	0.0	-2.74	0.61	0.85	1.84	3.3	0.003	0.66	0.0	0.04	16.91	0.00	2.404	9.37	5.73	4.3	95.7	0.0	0.75	0.91	0.58	0.85	2.34	6160	804	2	0	0	0	0	logfile
✔	6W7M	21571	2024-12-27	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	23.74	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.006	0.94	0.0	0.05	24.20	0.01	1.964	23.58	3.70	12.2	87.6	0.2	-2.54	0.79	0.71	0.62	0.56	50694	2319	20	1512	0	0	0	logfile
✔	7BoU	30134	2024-12-27	2020-03-19	3.6	3.75	—	3.7	0.007	1.27	0.0	0.06	12.07	0.01	2.311	7.57	0.92	7.1	91.6	1.3	-5.82	0.79	0.82	2.04	3.7	0.004	0.86	0.0	0.04	16.37	0.00	2.440	11.92	2.84	8.1	91.6	0.3	-0.53	1.56	0.80	0.83	1.35	48708	6300	12	0	0	0	0	logfile
✔	6W77	21569	2024-12-27	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	23.07	0.00	2.084	9.33	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.007	0.98	0.0	0.05	23.58	0.01	2.077	15.81	4.65	12.2	87.8	0.1	-2.66	2.59	0.77	0.72	0.84	47940	1949	18	1519	0	0	0	logfile
✔	6M7D	30129	2024-12-27	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	14.95	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.53	0.0	0.04	16.74	0.00	2.467	7.82	1.46	1.7	98.3	0.0	2.09	0.83	0.34	0.88	3.29	3280	412	2	6	0	0	0	logfile
✔	6W6o	21560	2024-12-28	2020-03-17	3.2	3.40	—	3.4	0.011	1.34	0.0	0.06	24.62	0.00	2.078	53.37	16.39	15.2	83.3	1.6	-4.85	0.63	0.75	1.80	3.4	0.003	0.79	0.0	0.04	19.87	0.00	2.348	11.28	4.83	6.1	93.9	0.0	0.91	1.74	0.63	0.82	2.03	9180	1044	12	0	12	0	0	logfile

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