Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W6o	21560	2024-12-28	2020-03-17	3.2	3.40	—	3.4	0.011	1.34	0.0	0.06	24.62	0.00	2.078	53.37	16.39	15.2	83.3	1.6	-4.85	0.63	0.75	1.80	3.4	0.003	0.79	0.0	0.04	19.87	0.00	2.348	11.28	4.83	6.1	93.9	0.0	0.91	1.74	0.63	0.82	2.03	9180	1044	12	0	12	0	0	logfile
✔	6W6K	21558	2024-12-26	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	23.24	0.00	2.113	10.37	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	1.08	0.0	0.05	24.63	0.01	1.989	27.31	5.33	16.1	83.9	0.1	-3.84	1.45	0.76	0.69	0.52	46934	1873	19	1534	1	0	0	logfile
✔	6W6M	21559	2024-12-29	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.73	2.71	2.8	0.004	0.78	1.0	0.05	14.49	0.01	2.386	5.13	2.42	5.4	94.6	0.0	-1.11	1.68	0.73	0.82	2.55	43638	5768	14	0	0	0	0	logfile
✔	6W6W	21567	2024-12-30	2020-03-17	3.0	3.23	—	3.1	0.006	0.99	1.0	0.06	14.89	0.01	2.303	2.69	0.00	12.1	87.6	0.3	-5.09	0.64	0.84	3.49	3.1	0.004	0.76	0.0	0.05	16.53	0.00	2.460	6.38	2.02	10.3	89.5	0.1	-2.48	0.50	0.66	0.87	3.14	10981	1388	6	4	1	0	0	logfile
✔	6W64	21552	2024-12-28	2020-03-16	3.9	4.06	—	4.0	0.003	0.58	0.0	0.04	16.24	0.00	2.196	9.67	1.29	7.0	92.9	0.1	0.30	0.74	0.70	0.86	4.0	0.004	0.76	0.0	0.04	19.73	0.00	2.483	16.15	2.33	8.4	91.6	0.0	-0.67	0.93	0.76	0.72	1.07	8505	928	3	56	0	0	0	logfile
✔	6W62	21551	2024-12-28	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	16.09	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.007	1.10	1.0	0.05	18.01	0.00	2.120	18.62	2.97	9.7	90.2	0.1	-1.78	1.19	0.72	0.68	0.58	7387	910	2	24	0	0	0	logfile
✔	6M71	30127	2024-12-28	2020-03-16	2.9	3.35	3.10	3.3	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.74	0.80	3.55	3.3	0.003	0.62	0.0	0.04	15.65	0.00	2.434	7.47	2.22	3.2	96.8	0.0	-0.01	1.71	0.75	0.82	3.27	8614	1085	4	0	0	0	0	logfile
✔	6M68	30116	2024-12-31	2020-03-13	4.6	5.04	—	4.8	0.005	1.00	0.0	0.06	14.61	0.01	2.028	5.67	0.00	10.0	90.0	0.0	-5.56	0.66	0.79	—	4.8	0.003	0.77	0.0	0.05	13.83	0.00	2.567	13.33	0.00	8.8	91.2	0.0	-1.54	1.53	0.66	0.79	—	14938	1855	7	0	0	0	0	logfile
✔	6W5V	21549	2024-12-31	2020-03-13	4.0	4.11	—	4.0	0.008	1.37	4.0	0.18	19.78	0.01	1.979	62.54	9.99	7.0	92.3	0.7	-2.21	0.63	0.75	—	4.0	0.004	0.87	0.0	0.05	16.38	0.00	2.261	13.74	3.77	6.9	93.1	0.0	-0.36	0.84	0.64	0.78	—	10586	1307	9	0	24	0	0	logfile
✔	6W5C	21541	2024-12-29	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	18.52	0.00	2.103	8.53	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.006	0.64	0.0	0.04	20.04	0.00	2.490	9.57	1.94	7.9	92.1	0.0	-0.33	2.18	0.84	0.83	3.53	10183	1023	5	105	0	0	0	logfile
✔	6W5U	21548	2024-12-31	2020-03-13	3.9	3.97	—	3.9	0.011	1.52	4.0	0.16	20.44	0.01	1.741	63.51	6.82	8.5	90.5	1.0	-2.76	0.61	0.76	1.73	3.9	0.004	0.89	0.0	0.05	16.85	0.00	2.435	12.23	4.15	7.0	92.9	0.1	-0.43	1.74	0.62	0.78	1.34	9474	1175	6	0	21	0	0	logfile
✔	6W5S	21546	2024-12-31	2020-03-13	3.0	3.15	—	3.1	0.005	0.83	1.0	0.13	18.49	0.01	1.946	31.03	2.70	7.6	92.0	0.4	-3.24	0.67	0.81	2.46	3.1	0.003	0.75	0.0	0.04	15.89	0.00	2.393	5.88	1.93	6.3	93.4	0.3	0.31	0.50	0.67	0.85	2.22	9700	1194	6	0	21	0	0	logfile
✔	6M66	30114	2024-12-31	2020-03-13	4.1	4.40	—	4.2	0.005	1.08	0.0	0.06	16.35	0.01	2.024	9.42	0.00	8.8	91.2	0.0	-5.00	0.64	0.75	—	4.2	0.003	0.82	0.0	0.05	14.92	0.01	2.593	13.27	0.00	8.1	91.9	0.0	-1.16	1.68	0.64	0.74	—	14938	1855	7	0	0	0	0	logfile
✔	6W5R	21545	2024-12-31	2020-03-13	3.6	3.75	—	3.7	0.015	2.10	7.0	0.18	17.45	0.01	2.053	4.99	3.86	6.7	92.6	0.7	-3.31	0.61	0.75	2.23	3.7	0.003	0.76	0.0	0.04	15.53	0.00	2.548	6.99	3.67	6.5	93.3	0.3	-0.01	0.53	0.63	0.77	1.69	9629	1194	6	0	20	0	0	logfile
✔	6W5T	21547	2024-12-31	2020-03-13	3.7	3.75	—	3.7	0.007	1.14	2.0	0.18	19.77	0.01	2.054	48.42	5.60	8.0	91.5	0.5	-2.80	0.61	0.76	1.74	3.7	0.004	0.84	0.0	0.05	16.24	0.00	2.394	10.86	3.44	6.3	93.6	0.1	-0.05	1.32	0.62	0.78	1.64	9505	1175	6	0	21	0	0	logfile
✔	6YAE	10747	2024-12-30	2020-03-12	3.9	4.10	4.00	4.1	0.009	0.82	0.0	0.05	14.19	0.00	2.093	17.68	0.13	9.3	90.5	0.2	-3.34	0.77	0.85	1.78	4.1	0.003	0.73	0.0	0.04	16.44	0.00	2.410	9.74	1.90	4.3	95.7	0.1	0.46	1.26	0.75	0.83	1.03	13707	1717	4	0	0	0	0	logfile
✔	6W4S	21539	2024-12-27	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.10	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.003	0.60	0.0	0.04	15.46	0.00	2.427	8.30	4.64	3.1	96.9	0.0	1.76	0.45	0.57	0.84	2.15	4986	650	3	0	0	0	0	logfile
✔	6M5V	30094	2024-12-29	2020-03-11	4.5	4.75	—	4.6	0.007	0.86	1.0	0.05	16.07	0.00	2.209	18.28	5.50	9.0	90.9	0.2	-3.04	0.56	0.57	—	4.6	0.003	0.81	0.0	0.04	13.87	0.00	1.982	17.51	0.00	8.4	91.5	0.1	-0.67	2.42	0.63	0.74	—	10549	1359	5	0	5	0	0	logfile
✔	6M5U	30093	2024-12-29	2020-03-11	3.8	3.78	—	3.8	0.007	0.86	1.0	0.05	16.07	0.00	2.210	18.52	5.59	9.0	90.8	0.2	-3.03	0.62	0.81	1.90	3.8	0.003	0.68	0.0	0.04	16.93	0.00	2.092	8.64	4.03	8.4	91.6	0.0	-0.05	2.21	0.65	0.82	1.38	10549	1359	5	0	5	0	0	logfile
✔	6M5S	30091	2024-12-29	2020-03-11	3.9	3.99	—	3.9	0.005	0.77	2.0	0.05	15.65	0.00	2.015	11.35	5.29	9.2	90.6	0.1	-3.65	0.59	0.68	1.57	3.9	0.004	0.97	1.0	0.05	16.57	0.00	2.100	13.09	3.00	9.0	91.0	0.0	-0.95	0.99	0.62	0.76	1.65	11055	1440	4	0	2	0	0	logfile

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